Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000868A_C01 KMC000868A_c01
(565 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAG28895.1|AC008113_11 F12A21.24 [Arabidopsis thaliana] 35 0.49
ref|NP_193873.1| hypothetical protein; protein id: At4g21420.1 [... 35 0.84
ref|NP_178715.1| hypothetical protein; protein id: At2g06980.1 [... 33 3.2
ref|NP_180354.1| putative reverse transcriptase; protein id: At2... 33 3.2
gb|AAK92670.1|AC090714_3 putative gag-pol precursor [Oryza sativ... 33 3.2
>gb|AAG28895.1|AC008113_11 F12A21.24 [Arabidopsis thaliana]
Length = 803
Score = 35.4 bits (80), Expect = 0.49
Identities = 23/54 (42%), Positives = 28/54 (51%), Gaps = 3/54 (5%)
Frame = +3
Query: 222 LLSRAWEVSITHVPREGNEPTDCLAGLGASMQCPFTELVVPP---RMVLHLLSL 374
LLS+ W V ITHV RE N D LA S+ F L+ P ++LH SL
Sbjct: 740 LLSKDWIVRITHVYREANRLADGLANYAFSLPLGFHSLIDVPDDLEVILHEDSL 793
>ref|NP_193873.1| hypothetical protein; protein id: At4g21420.1 [Arabidopsis
thaliana] gi|7485719|pir||T05150 hypothetical protein
F18E5.40 - Arabidopsis thaliana
gi|3080386|emb|CAA18706.1| hypothetical protein
[Arabidopsis thaliana] gi|3402761|emb|CAA20207.1|
hypothetical protein [Arabidopsis thaliana]
gi|7268939|emb|CAB81249.1| hypothetical protein
[Arabidopsis thaliana]
Length = 229
Score = 34.7 bits (78), Expect = 0.84
Identities = 19/43 (44%), Positives = 24/43 (55%)
Frame = +3
Query: 249 ITHVPREGNEPTDCLAGLGASMQCPFTELVVPPRMVLHLLSLD 377
++HV REGN D LA LG Q P V PP +VL ++ D
Sbjct: 177 LSHVYREGNRVADKLAKLGHQFQDPKVWRVQPPEIVLPIMHDD 219
>ref|NP_178715.1| hypothetical protein; protein id: At2g06980.1 [Arabidopsis
thaliana] gi|25411262|pir||A84481 hypothetical protein
At2g06980 [imported] - Arabidopsis thaliana
gi|3779023|gb|AAC67202.1| hypothetical protein
[Arabidopsis thaliana]
Length = 117
Score = 32.7 bits (73), Expect = 3.2
Identities = 20/52 (38%), Positives = 26/52 (49%)
Frame = +3
Query: 222 LLSRAWEVSITHVPREGNEPTDCLAGLGASMQCPFTELVVPPRMVLHLLSLD 377
LLS+ W V I+HV RE N+ D LA S+ P +LH L+ D
Sbjct: 54 LLSKDWLVRISHVYREANQLADGLANYAFSLPLGLHLFDSCPDCMLHCLAED 105
>ref|NP_180354.1| putative reverse transcriptase; protein id: At2g27870.1
[Arabidopsis thaliana] gi|25407930|pir||H84677
hypothetical protein At2g27870 [imported] - Arabidopsis
thaliana gi|4510429|gb|AAD21515.1| putative reverse
transcriptase [Arabidopsis thaliana]
gi|20197456|gb|AAM15081.1| putative reverse
transcriptase [Arabidopsis thaliana]
Length = 314
Score = 32.7 bits (73), Expect = 3.2
Identities = 18/48 (37%), Positives = 24/48 (49%)
Frame = +3
Query: 225 LSRAWEVSITHVPREGNEPTDCLAGLGASMQCPFTELVVPPRMVLHLL 368
+SR W V I+HV RE N D LA S+ F L + P + +L
Sbjct: 252 ISRDWRVRISHVYREANRLADGLANYAFSLPLGFHSLSLVPDSLRFIL 299
>gb|AAK92670.1|AC090714_3 putative gag-pol precursor [Oryza sativa (japonica cultivar-group)]
Length = 1262
Score = 32.7 bits (73), Expect = 3.2
Identities = 19/60 (31%), Positives = 32/60 (52%)
Frame = +3
Query: 144 LFQLLKQKLNKFQFHRYMSALLEIQLLLSRAWEVSITHVPREGNEPTDCLAGLGASMQCP 323
++++LKQ+L + Y +A + L+ + + HVPR N P D LA L A++ P
Sbjct: 824 IYEVLKQELVPY----YSAA----RRLMEMFGHIEVMHVPRSRNAPADALAKLAAALVLP 875
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 456,197,564
Number of Sequences: 1393205
Number of extensions: 9368259
Number of successful extensions: 19693
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 19267
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19689
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 20382500157
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
