Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000865A_C01 KMC000865A_c01
(487 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_786983.1| calcium channel, voltage-dependent, beta 2 subu... 37 0.15
gb|AAF26682.1|AF174418_1 voltage-dependent calcium channel beta2... 37 0.15
gb|AAO38996.1| calcium channel beta 2c subunit [Rattus norvegicus] 36 0.20
pir||S21046 calcium channel protein beta chain CaB2a - rabbit gi... 36 0.20
prf||2111412A Ca channel:SUBUNIT=beta 36 0.20
>ref|NP_786983.1| calcium channel, voltage-dependent, beta 2 subunit [Bos taurus]
gi|20454853|sp|Q9MZL5|CCB2_BOVIN
Dihydropyridine-sensitive L-type, calcium channel beta-2
subunit (CAB2) (Voltage-dependent calcium channel beta-2
subunit) gi|6716567|gb|AAF26681.1|AF174417_1
voltage-dependent calcium channel beta2A subunit [Bos
taurus]
Length = 603
Score = 36.6 bits (83), Expect = 0.15
Identities = 28/99 (28%), Positives = 42/99 (42%)
Frame = +3
Query: 93 PK*VRSLRQVAKIRFKQQSFQMGKETQT*STKKGETTASSTFTRPPTVTISNSNS*ASAE 272
P + ++R + R KQ F K S+ G+ SS + PP+ I + AE
Sbjct: 121 PVKLENMRLQHEQRAKQGKFYSSKSGGNSSSSLGDIVPSSRKSTPPSSAIDIDATGLDAE 180
Query: 273 GSPSPNSVKRPNNK*QIERVNSMQLPHNKEKNMLFKSNT 389
+ P + + P NS+ PH+KEK M F T
Sbjct: 181 DNDIPANHRSPKPS-----ANSVTSPHSKEKRMPFFKKT 214
>gb|AAF26682.1|AF174418_1 voltage-dependent calcium channel beta2B subunit [Bos taurus]
Length = 618
Score = 36.6 bits (83), Expect = 0.15
Identities = 28/99 (28%), Positives = 42/99 (42%)
Frame = +3
Query: 93 PK*VRSLRQVAKIRFKQQSFQMGKETQT*STKKGETTASSTFTRPPTVTISNSNS*ASAE 272
P + ++R + R KQ F K S+ G+ SS + PP+ I + AE
Sbjct: 136 PVKLENMRLQHEQRAKQGKFYSSKSGGNSSSSLGDIVPSSRKSTPPSSAIDIDATGLDAE 195
Query: 273 GSPSPNSVKRPNNK*QIERVNSMQLPHNKEKNMLFKSNT 389
+ P + + P NS+ PH+KEK M F T
Sbjct: 196 DNDIPANHRSPKPS-----ANSVTSPHSKEKRMPFFKKT 229
>gb|AAO38996.1| calcium channel beta 2c subunit [Rattus norvegicus]
Length = 631
Score = 36.2 bits (82), Expect = 0.20
Identities = 28/99 (28%), Positives = 42/99 (42%)
Frame = +3
Query: 93 PK*VRSLRQVAKIRFKQQSFQMGKETQT*STKKGETTASSTFTRPPTVTISNSNS*ASAE 272
P + ++R + R KQ F K S+ G+ SS + PP+ I + AE
Sbjct: 148 PVKLENMRLQHEQRAKQGKFYSSKSGGNSSSSLGDIVPSSRKSTPPSSAIDIDATGLDAE 207
Query: 273 GSPSPNSVKRPNNK*QIERVNSMQLPHNKEKNMLFKSNT 389
+ P + + P NS+ PH+KEK M F T
Sbjct: 208 ENDIPANHRSPKPS-----ANSVTSPHSKEKRMPFFKKT 241
>pir||S21046 calcium channel protein beta chain CaB2a - rabbit
gi|1498|emb|CAA45575.1| cardiac calcium channel
beta-subunit CaB2a (splice variant of the gene CaB2
[Oryctolagus cuniculus]
Length = 606
Score = 36.2 bits (82), Expect = 0.20
Identities = 28/99 (28%), Positives = 42/99 (42%)
Frame = +3
Query: 93 PK*VRSLRQVAKIRFKQQSFQMGKETQT*STKKGETTASSTFTRPPTVTISNSNS*ASAE 272
P + ++R + R KQ F K S+ G+ SS + PP+ I + AE
Sbjct: 122 PVKLENMRLQHEQRAKQGKFYSSKSGGNSSSSLGDIVPSSRKSTPPSSAIDIDATGLDAE 181
Query: 273 GSPSPNSVKRPNNK*QIERVNSMQLPHNKEKNMLFKSNT 389
+ P + + P NS+ PH+KEK M F T
Sbjct: 182 ENDIPANHRSPKPS-----ANSVTSPHSKEKRMPFFKKT 215
>prf||2111412A Ca channel:SUBUNIT=beta
Length = 611
Score = 36.2 bits (82), Expect = 0.20
Identities = 28/99 (28%), Positives = 42/99 (42%)
Frame = +3
Query: 93 PK*VRSLRQVAKIRFKQQSFQMGKETQT*STKKGETTASSTFTRPPTVTISNSNS*ASAE 272
P + ++R + R KQ F K S+ G+ SS + PP+ I + AE
Sbjct: 128 PVKLENMRLQHEQRAKQGKFYSSKSGGNSSSSLGDIVPSSRKSTPPSSAIDIDATGLDAE 187
Query: 273 GSPSPNSVKRPNNK*QIERVNSMQLPHNKEKNMLFKSNT 389
+ P + + P NS+ PH+KEK M F T
Sbjct: 188 ENDIPANHRSPKPS-----ANSVTSPHSKEKRMPFFKKT 221
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 393,213,254
Number of Sequences: 1393205
Number of extensions: 7980532
Number of successful extensions: 18295
Number of sequences better than 10.0: 56
Number of HSP's better than 10.0 without gapping: 17393
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18256
length of database: 448,689,247
effective HSP length: 113
effective length of database: 291,257,082
effective search space used: 13980339936
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
