Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000863A_C01 KMC000863A_c01
(636 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_565891.1| expressed protein; protein id: At2g38480.1, sup... 145 3e-34
pir||T02497 hypothetical protein At2g38480 [imported] - Arabidop... 145 3e-34
gb|AAM62879.1| unknown [Arabidopsis thaliana] 144 7e-34
gb|AAO60016.1| hypothetical protein [Oryza sativa (japonica cult... 142 5e-33
gb|AAO22748.1| unknown protein [Arabidopsis thaliana] 89 5e-17
>ref|NP_565891.1| expressed protein; protein id: At2g38480.1, supported by cDNA:
16674., supported by cDNA: gi_13878170, supported by
cDNA: gi_17104526 [Arabidopsis thaliana]
gi|13878171|gb|AAK44163.1|AF370348_1 unknown protein
[Arabidopsis thaliana] gi|17104527|gb|AAL34152.1|
unknown protein [Arabidopsis thaliana]
gi|20197244|gb|AAM14993.1| expressed protein
[Arabidopsis thaliana] gi|20197397|gb|AAC67370.2|
expressed protein [Arabidopsis thaliana]
Length = 188
Score = 145 bits (367), Expect = 3e-34
Identities = 76/141 (53%), Positives = 102/141 (71%)
Frame = -3
Query: 628 RGLALFFSLISLILVASNKHGVWADFDKYPQYRYLLAIAILSCFYTGGQVHLGVHELSTG 449
RG+ L FSLI+ +++ SNKHG +F+ Y +YRY+LAI+I+S YT Q +
Sbjct: 52 RGICLLFSLIAFLIMVSNKHGYGRNFNDYEEYRYVLAISIISTLYTAWQTFAHFSK---- 107
Query: 448 RKMLQPRIAVLFDFIGDQIMAYLLISSASSAIPITDTIREGGDNIFTDSSSSAISMSFLA 269
R++ R ++L DF GDQI+AYLLIS+ASSAIP+T+ REG DNIFTDS++SAISM+ A
Sbjct: 108 REIFDRRTSILVDFSGDQIVAYLLISAASSAIPLTNIFREGQDNIFTDSAASAISMAIFA 167
Query: 268 FICLALSAIISGHKLSAQTCI 206
FI LALSA+ SG+KLS + I
Sbjct: 168 FIALALSALFSGYKLSTHSFI 188
>pir||T02497 hypothetical protein At2g38480 [imported] - Arabidopsis thaliana
Length = 243
Score = 145 bits (367), Expect = 3e-34
Identities = 76/141 (53%), Positives = 102/141 (71%)
Frame = -3
Query: 628 RGLALFFSLISLILVASNKHGVWADFDKYPQYRYLLAIAILSCFYTGGQVHLGVHELSTG 449
RG+ L FSLI+ +++ SNKHG +F+ Y +YRY+LAI+I+S YT Q +
Sbjct: 107 RGICLLFSLIAFLIMVSNKHGYGRNFNDYEEYRYVLAISIISTLYTAWQTFAHFSK---- 162
Query: 448 RKMLQPRIAVLFDFIGDQIMAYLLISSASSAIPITDTIREGGDNIFTDSSSSAISMSFLA 269
R++ R ++L DF GDQI+AYLLIS+ASSAIP+T+ REG DNIFTDS++SAISM+ A
Sbjct: 163 REIFDRRTSILVDFSGDQIVAYLLISAASSAIPLTNIFREGQDNIFTDSAASAISMAIFA 222
Query: 268 FICLALSAIISGHKLSAQTCI 206
FI LALSA+ SG+KLS + I
Sbjct: 223 FIALALSALFSGYKLSTHSFI 243
>gb|AAM62879.1| unknown [Arabidopsis thaliana]
Length = 188
Score = 144 bits (364), Expect = 7e-34
Identities = 75/141 (53%), Positives = 102/141 (72%)
Frame = -3
Query: 628 RGLALFFSLISLILVASNKHGVWADFDKYPQYRYLLAIAILSCFYTGGQVHLGVHELSTG 449
RG+ L FSLI+ +++ SNKHG +F+ Y +YRY+L+I+I+S YT Q +
Sbjct: 52 RGICLLFSLIAFLIMVSNKHGYGRNFNDYEEYRYVLSISIISTLYTAWQTFAHFSK---- 107
Query: 448 RKMLQPRIAVLFDFIGDQIMAYLLISSASSAIPITDTIREGGDNIFTDSSSSAISMSFLA 269
R++ R ++L DF GDQI+AYLLIS+ASSAIP+T+ REG DNIFTDS++SAISM+ A
Sbjct: 108 REIFDRRTSILVDFSGDQIVAYLLISAASSAIPLTNIFREGQDNIFTDSAASAISMAIFA 167
Query: 268 FICLALSAIISGHKLSAQTCI 206
FI LALSA+ SG+KLS + I
Sbjct: 168 FIALALSALFSGYKLSTHSFI 188
>gb|AAO60016.1| hypothetical protein [Oryza sativa (japonica cultivar-group)]
Length = 156
Score = 142 bits (357), Expect = 5e-33
Identities = 71/145 (48%), Positives = 104/145 (70%), Gaps = 3/145 (2%)
Frame = -3
Query: 631 LRGLALFFSLISLILVASNKHGVWA--DFDKYPQYRYLLAIAILSCFYTGGQVHLGVHEL 458
LR +A FSL++L+++ASNKHG DFD YP+Y Y L I+I++ YT QV VH L
Sbjct: 12 LRAVAWLFSLLALVVMASNKHGHGGAQDFDNYPEYTYCLGISIIAVLYTTAQVTRDVHRL 71
Query: 457 STGRKMLQPR-IAVLFDFIGDQIMAYLLISSASSAIPITDTIREGGDNIFTDSSSSAISM 281
S GR ++ R A + DF GDQ++AYLL+S+ S+A P+TD +R+ DN+FTDS+++AISM
Sbjct: 72 SWGRDVIAGRKAAAVVDFAGDQVVAYLLMSALSAAAPVTDYMRQAADNLFTDSAAAAISM 131
Query: 280 SFLAFICLALSAIISGHKLSAQTCI 206
+FLAF+ LSA++SG+ L+ + +
Sbjct: 132 AFLAFLAAGLSALVSGYNLAMEVLV 156
>gb|AAO22748.1| unknown protein [Arabidopsis thaliana]
Length = 283
Score = 89.0 bits (219), Expect = 5e-17
Identities = 48/143 (33%), Positives = 90/143 (62%), Gaps = 3/143 (2%)
Frame = -3
Query: 634 GLRGLALFFSLISLILVASNKHGVWA--DFDKYPQYRYLLAIAILSCFYTGGQVHLGVHE 461
G R + +LIS ++A++K W+ FD+Y +YR+ L++ +++ Y+ Q +
Sbjct: 138 GFRLSEVVLALISFSIMAADKTKGWSGDSFDRYKEYRFCLSVNVVAFVYSSFQACDLAYH 197
Query: 460 LSTGRKMLQPRIAVLFDFIGDQIMAYLLISSASSAIP-ITDTIREGGDNIFTDSSSSAIS 284
L + ++ + LF+FI DQ++AYLL+S++++A+ + D + G + FT+ +S++I+
Sbjct: 198 LVKEKHLISHHLRPLFEFIIDQVLAYLLMSASTAAVTRVDDWVSNWGKDEFTEMASASIA 257
Query: 283 MSFLAFICLALSAIISGHKLSAQ 215
MSFLAF+ A S++ISG+ L Q
Sbjct: 258 MSFLAFLAFAFSSLISGYNLFNQ 280
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 557,794,571
Number of Sequences: 1393205
Number of extensions: 12123212
Number of successful extensions: 29917
Number of sequences better than 10.0: 35
Number of HSP's better than 10.0 without gapping: 28879
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 29896
length of database: 448,689,247
effective HSP length: 118
effective length of database: 284,291,057
effective search space used: 26439068301
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
