Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000858A_C01 KMC000858A_c01
(679 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_175627.1| HD-Zip transcription factor; protein id: At1g52... 228 4e-59
emb|CAC84276.1| HD-Zip protein [Zinnia elegans] 210 1e-53
dbj|BAC22512.1| homeobox leucine-zipper protein [Zinnia elegans] 198 6e-50
ref|NP_195014.1| HD-Zip transcription factor, Athb-8; protein id... 192 3e-48
dbj|BAB92205.1| putative HD-zip transcription factor [Oryza sati... 183 2e-45
>ref|NP_175627.1| HD-Zip transcription factor; protein id: At1g52150.1, supported by
cDNA: gi_16974580 [Arabidopsis thaliana]
gi|25405530|pir||E96561 hypothetical protein F5F19.21
[imported] - Arabidopsis thaliana
gi|4220462|gb|AAD12689.1| Strong similarity to gb|Z50851
HD-zip (athb-8) gene from Arabidopsis thaliana containing
Homeobox PF|00046 and bZIP PF|00170 domains
gi|16974581|gb|AAL31186.1| At1g52150/F5F19_21
[Arabidopsis thaliana] gi|19578319|emb|CAD28400.1|
homeodomain-leucine zipper protein [Arabidopsis thaliana]
Length = 836
Score = 228 bits (582), Expect = 4e-59
Identities = 103/123 (83%), Positives = 119/123 (96%)
Frame = -3
Query: 677 NNEGSESLLKSLWHHSDAILCCTLKASPVFTFSNQAGLDMLETTLVALQDITLEKIFDDH 498
N++G+ES+LK+LWHH+DAI+CC++KA PVFTF+NQAGLDMLETTLVALQDI+LEKIFDD+
Sbjct: 714 NSDGNESILKNLWHHTDAIICCSMKALPVFTFANQAGLDMLETTLVALQDISLEKIFDDN 773
Query: 497 GRKILFSEFPQIIQQGFACLQGGLCLSSMGRPVSYERVVAWKVLNEEENAHCICFMFVNW 318
GRK L SEFPQI+QQGFACLQGG+CLSSMGRPVSYER VAWKVLNEEENAHCICF+F+NW
Sbjct: 774 GRKTLCSEFPQIMQQGFACLQGGICLSSMGRPVSYERAVAWKVLNEEENAHCICFVFINW 833
Query: 317 SFV 309
SFV
Sbjct: 834 SFV 836
>emb|CAC84276.1| HD-Zip protein [Zinnia elegans]
Length = 838
Score = 210 bits (535), Expect = 1e-53
Identities = 93/121 (76%), Positives = 111/121 (90%)
Frame = -3
Query: 671 EGSESLLKSLWHHSDAILCCTLKASPVFTFSNQAGLDMLETTLVALQDITLEKIFDDHGR 492
EGS+S+LKS+WHHSDAI+CC+LK PVF F+NQ GLDMLE LVALQDI+L+KI D++GR
Sbjct: 718 EGSDSILKSMWHHSDAIVCCSLKGMPVFPFANQGGLDMLEPPLVALQDISLKKILDENGR 777
Query: 491 KILFSEFPQIIQQGFACLQGGLCLSSMGRPVSYERVVAWKVLNEEENAHCICFMFVNWSF 312
K+L+SEFPQI+QQGFACLQGG+C+SSMGRPVSYER VAWKV+NE+E HCICFMF+NWSF
Sbjct: 778 KVLWSEFPQIMQQGFACLQGGICVSSMGRPVSYERAVAWKVVNEDETPHCICFMFINWSF 837
Query: 311 V 309
V
Sbjct: 838 V 838
>dbj|BAC22512.1| homeobox leucine-zipper protein [Zinnia elegans]
Length = 836
Score = 198 bits (503), Expect = 6e-50
Identities = 91/122 (74%), Positives = 107/122 (87%)
Frame = -3
Query: 674 NEGSESLLKSLWHHSDAILCCTLKASPVFTFSNQAGLDMLETTLVALQDITLEKIFDDHG 495
+E S+++LK+LWHHSDAI+CC+LKA P FTF+NQAGLDMLETTLV+LQDITL+KIFD G
Sbjct: 715 DERSDTMLKTLWHHSDAIMCCSLKALPDFTFANQAGLDMLETTLVSLQDITLDKIFDRGG 774
Query: 494 RKILFSEFPQIIQQGFACLQGGLCLSSMGRPVSYERVVAWKVLNEEENAHCICFMFVNWS 315
R + SE PQI+QQGFAC G+CL+SMGRPVSYER VAWKVLN+EEN HCI F+FVNWS
Sbjct: 775 RTSICSELPQILQQGFACFPSGVCLTSMGRPVSYERAVAWKVLNDEENPHCIAFVFVNWS 834
Query: 314 FV 309
FV
Sbjct: 835 FV 836
>ref|NP_195014.1| HD-Zip transcription factor, Athb-8; protein id: At4g32880.1,
supported by cDNA: gi_20466329 [Arabidopsis thaliana]
gi|7488380|pir||T10695 transcription factor HD-zip -
Arabidopsis thaliana gi|1149569|emb|CAA90703.1| HD-zip
[Arabidopsis thaliana] gi|7270235|emb|CAB80005.1| HD-zip
transcription factor (athb-8) [Arabidopsis thaliana]
gi|20152536|emb|CAD29660.1| homeodomain-leucine zipper
protein 8 [Arabidopsis thaliana]
gi|20466330|gb|AAM20482.1| HD-zip transcription factor
(athb-8) [Arabidopsis thaliana]
Length = 833
Score = 192 bits (489), Expect = 3e-48
Identities = 88/118 (74%), Positives = 107/118 (90%), Gaps = 2/118 (1%)
Frame = -3
Query: 656 LLKSLWHHSDAILCCTLKA-SPVFTFSNQAGLDMLETTLVALQDITLEKIFDDH-GRKIL 483
LLKSLWHH DA++CC+LKA SPVFTF+NQAGLDMLETTLVALQDITL+KIFD++ G+K L
Sbjct: 716 LLKSLWHHPDAVMCCSLKALSPVFTFANQAGLDMLETTLVALQDITLDKIFDNNNGKKTL 775
Query: 482 FSEFPQIIQQGFACLQGGLCLSSMGRPVSYERVVAWKVLNEEENAHCICFMFVNWSFV 309
SEFPQI+QQGF C+ GG+C+SSMGR V+YE+ V WKVLN++E+ HCICFMF+NWSF+
Sbjct: 776 SSEFPQIMQQGFMCMDGGICMSSMGRAVTYEKAVGWKVLNDDEDPHCICFMFLNWSFI 833
>dbj|BAB92205.1| putative HD-zip transcription factor [Oryza sativa (japonica
cultivar-group)]
Length = 898
Score = 183 bits (465), Expect = 2e-45
Identities = 81/123 (65%), Positives = 105/123 (84%), Gaps = 1/123 (0%)
Frame = -3
Query: 674 NEGSESLLKSLWHHSDAILCCTLKASPVFTFSNQAGLDMLETTLVALQDITLEKIFDDHG 495
N +ES+LK++WHH AILCC+LKA PVFTF+NQ+GLDMLETTLVALQD+TLEK+FDD G
Sbjct: 776 NSSNESILKAVWHHPSAILCCSLKAMPVFTFANQSGLDMLETTLVALQDMTLEKVFDDQG 835
Query: 494 RKILFSEFPQIIQQGFACLQGGLCLSSMGRPVSYERVVAWKVLN-EEENAHCICFMFVNW 318
RK L +E P I++QG AC++GG+C+SS+GR SYE+ VAWKV++ + AHCICFMF+NW
Sbjct: 836 RKNLCTELPNIMEQGMACMEGGVCVSSVGRAASYEKAVAWKVVDGDGGGAHCICFMFINW 895
Query: 317 SFV 309
+F+
Sbjct: 896 TFL 898
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 570,436,382
Number of Sequences: 1393205
Number of extensions: 12338534
Number of successful extensions: 24427
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 23717
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24403
length of database: 448,689,247
effective HSP length: 119
effective length of database: 282,897,852
effective search space used: 29987172312
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
