Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000856A_C01 KMC000856A_c01
(636 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAM60952.1| unknown [Arabidopsis thaliana] 39 0.044
ref|NP_197584.1| putative protein; protein id: At5g20840.1 [Arab... 39 0.044
gb|AAM09360.1| similar to Homo sapiens (Human). Hypothetical pro... 38 0.13
pir||T49236 hypothetical protein F7K15.70 - Arabidopsis thaliana... 36 0.37
ref|NP_189908.2| putative protein; protein id: At3g43220.1, supp... 36 0.37
>gb|AAM60952.1| unknown [Arabidopsis thaliana]
Length = 100
Score = 39.3 bits (90), Expect = 0.044
Identities = 24/58 (41%), Positives = 37/58 (63%), Gaps = 5/58 (8%)
Frame = -1
Query: 519 SSDNIESEL--VTEASASGSLSSVKGKQQSGTELN-HKDVK--YPESFERWVTHGELL 361
SS+NI +E+ +T A SS KGK+ TEL+ H ++ +P+SF++WV +GE L
Sbjct: 41 SSENIITEVKQLTPAMRESGSSSRKGKEPVETELSVHTKIRDDFPDSFKQWVAYGEAL 98
>ref|NP_197584.1| putative protein; protein id: At5g20840.1 [Arabidopsis thaliana]
Length = 774
Score = 39.3 bits (90), Expect = 0.044
Identities = 24/58 (41%), Positives = 37/58 (63%), Gaps = 5/58 (8%)
Frame = -1
Query: 519 SSDNIESEL--VTEASASGSLSSVKGKQQSGTELN-HKDVK--YPESFERWVTHGELL 361
SS+NI +E+ +T A SS KGK+ TEL+ H ++ +P+SF++WV +GE L
Sbjct: 715 SSENIITEVKQLTPAMRESGSSSRKGKEPVETELSVHTKIRDDFPDSFKQWVAYGEAL 772
>gb|AAM09360.1| similar to Homo sapiens (Human). Hypothetical protein KIAA1939
(Fragment) [Dictyostelium discoideum]
Length = 2084
Score = 37.7 bits (86), Expect = 0.13
Identities = 20/56 (35%), Positives = 35/56 (61%)
Frame = -1
Query: 633 ERSHANTGRNSLTLEEIIKIEGKQFNQSLASTPRSASISSDNIESELVTEASASGS 466
+ + N L L++ + + KQF +S++ST S SIS DN++SE++ + +SGS
Sbjct: 1283 QNQNQNQNNGDLELQQQQQ-QQKQFTKSISSTSISKSISKDNLKSEILKDDDSSGS 1337
>pir||T49236 hypothetical protein F7K15.70 - Arabidopsis thaliana
gi|7649362|emb|CAB89043.1| putative protein [Arabidopsis
thaliana]
Length = 794
Score = 36.2 bits (82), Expect = 0.37
Identities = 22/57 (38%), Positives = 33/57 (57%)
Frame = -1
Query: 531 SASISSDNIESELVTEASASGSLSSVKGKQQSGTELNHKDVKYPESFERWVTHGELL 361
S++ +S N + S SGS SS KGK+ GT++ +P+SF+ WV +GE L
Sbjct: 740 SSTENSVNGVGQSAPTISESGSSSS-KGKEPMGTKIRED---FPDSFKEWVAYGEAL 792
>ref|NP_189908.2| putative protein; protein id: At3g43220.1, supported by cDNA:
gi_20453209 [Arabidopsis thaliana]
Length = 818
Score = 36.2 bits (82), Expect = 0.37
Identities = 22/57 (38%), Positives = 33/57 (57%)
Frame = -1
Query: 531 SASISSDNIESELVTEASASGSLSSVKGKQQSGTELNHKDVKYPESFERWVTHGELL 361
S++ +S N + S SGS SS KGK+ GT++ +P+SF+ WV +GE L
Sbjct: 764 SSTENSVNGVGQSAPTISESGSSSS-KGKEPMGTKIRED---FPDSFKEWVAYGEAL 816
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 499,575,928
Number of Sequences: 1393205
Number of extensions: 10027136
Number of successful extensions: 25521
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 24861
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25513
length of database: 448,689,247
effective HSP length: 118
effective length of database: 284,291,057
effective search space used: 26439068301
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
