Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000855A_C02 KMC000855A_c02
(632 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||T00416 hypothetical protein T30B22.1 - Arabidopsis thaliana 126 2e-28
ref|NP_182290.1| putative ATP-dependent RNA helicase A; protein ... 126 2e-28
dbj|BAA85219.1| unnamed protein product [Oryza sativa (japonica ... 89 4e-17
ref|NP_763779.1| glycine betaine/carnitine/choline ABC transport... 32 9.1
>pir||T00416 hypothetical protein T30B22.1 - Arabidopsis thaliana
Length = 577
Score = 126 bits (317), Expect = 2e-28
Identities = 60/112 (53%), Positives = 83/112 (73%)
Frame = -1
Query: 632 DDLDGKKQLLQNFFEYLAIRILADDLHEVQVIITMNNIIFSLLQVEKLDRESFFILTESV 453
D + +K +LQNFFE++AIR+L D L++++V++TMNN+ FSLLQVEKL RESFF L ES
Sbjct: 464 DTPEKQKTILQNFFEHMAIRLLGDKLYKIRVVLTMNNVRFSLLQVEKLARESFFFLGESF 523
Query: 452 AFDETSFGELHDVVTPRRPMMISRATSYVFSLLPASDKHFGDYAATIKKQLH 297
D SFG D +T ++PM++SR SYVF+L P SD FG+Y + ++K LH
Sbjct: 524 PHDSESFGAFQDTLTIQKPMLVSRPISYVFNLHPPSDIQFGNYTSLLRKSLH 575
>ref|NP_182290.1| putative ATP-dependent RNA helicase A; protein id: At2g47680.1
[Arabidopsis thaliana] gi|25409050|pir||C84918 probable
ATP-dependent RNA helicase A [imported] - Arabidopsis
thaliana gi|3738282|gb|AAC63624.1| putative ATP-dependent
RNA helicase A [Arabidopsis thaliana]
Length = 1015
Score = 126 bits (317), Expect = 2e-28
Identities = 60/112 (53%), Positives = 83/112 (73%)
Frame = -1
Query: 632 DDLDGKKQLLQNFFEYLAIRILADDLHEVQVIITMNNIIFSLLQVEKLDRESFFILTESV 453
D + +K +LQNFFE++AIR+L D L++++V++TMNN+ FSLLQVEKL RESFF L ES
Sbjct: 902 DTPEKQKTILQNFFEHMAIRLLGDKLYKIRVVLTMNNVRFSLLQVEKLARESFFFLGESF 961
Query: 452 AFDETSFGELHDVVTPRRPMMISRATSYVFSLLPASDKHFGDYAATIKKQLH 297
D SFG D +T ++PM++SR SYVF+L P SD FG+Y + ++K LH
Sbjct: 962 PHDSESFGAFQDTLTIQKPMLVSRPISYVFNLHPPSDIQFGNYTSLLRKSLH 1013
>dbj|BAA85219.1| unnamed protein product [Oryza sativa (japonica cultivar-group)]
Length = 1197
Score = 89.4 bits (220), Expect = 4e-17
Identities = 44/104 (42%), Positives = 66/104 (63%)
Frame = -1
Query: 608 LLQNFFEYLAIRILADDLHEVQVIITMNNIIFSLLQVEKLDRESFFILTESVAFDETSFG 429
+LQ FF+++AI+ L++ + ++QVI+ MNN F LQVE+L RE F L ES FDE + G
Sbjct: 1092 VLQKFFQHIAIKTLSEKMSDLQVIVIMNNAKFVQLQVERLARECFLFLGESFMFDEATLG 1151
Query: 428 ELHDVVTPRRPMMISRATSYVFSLLPASDKHFGDYAATIKKQLH 297
D R M +S +Y+FS+ P + FGDYA+ ++K L+
Sbjct: 1152 WFSDTPNYPRGMQVSAPVAYIFSMHPPTGIQFGDYASELRKVLY 1195
>ref|NP_763779.1| glycine betaine/carnitine/choline ABC transporter (osmoprotec)
opuCC [Staphylococcus epidermidis ATCC 12228]
gi|27314684|gb|AAO03821.1|AE016744_224 glycine
betaine/carnitine/choline ABC transporter (osmoprotec)
opuCC [Staphylococcus epidermidis ATCC 12228]
Length = 319
Score = 31.6 bits (70), Expect = 9.1
Identities = 16/43 (37%), Positives = 24/43 (55%)
Frame = +1
Query: 361 LKTYEVALDIIIGLLGVTTSCNSPKLVSSKATDSVRIKKLSLS 489
+K Y+ L +++ L V + CN P L +S + D VRI L S
Sbjct: 1 MKNYKKYLIVLVLCLTVLSGCNLPGLKNSHSDDDVRITSLGTS 43
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 545,199,545
Number of Sequences: 1393205
Number of extensions: 11146828
Number of successful extensions: 20852
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 20449
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20848
length of database: 448,689,247
effective HSP length: 118
effective length of database: 284,291,057
effective search space used: 26154777244
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
