Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000854A_C01 KMC000854A_c01
(494 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_566681.1| expressed protein; protein id: At3g21290.1, sup... 119 1e-26
gb|AAK64031.1| unknown protein [Arabidopsis thaliana] 119 1e-26
dbj|BAB01722.1| gene_id:MXL8.16~unknown protein [Arabidopsis tha... 72 4e-12
gb|AAL13036.1| ELL [Drosophila melanogaster] 45 4e-04
ref|NP_649155.2| CG32217-PA [Drosophila melanogaster] gi|2309309... 45 4e-04
>ref|NP_566681.1| expressed protein; protein id: At3g21290.1, supported by cDNA:
gi_14532605 [Arabidopsis thaliana]
Length = 1192
Score = 119 bits (299), Expect = 1e-26
Identities = 58/90 (64%), Positives = 75/90 (82%), Gaps = 2/90 (2%)
Frame = -1
Query: 494 EFRDKYDSYCSLHKILESYRNEFQKLGDKLEYAKGMD--RYYDIVEQLKESYRRCGPRHK 321
E+ DKYDSY S++KILES+RN+FQKLG L +AKG D RY IVEQ+KESY + G RHK
Sbjct: 1103 EYNDKYDSYHSINKILESHRNDFQKLGQDLGFAKGRDVERYNKIVEQIKESYCKYGERHK 1162
Query: 320 RLKKIFVVLHQELENIKQRIKDYAHSYTKE 231
RLKK+FVVLH+EL+++KQR++DYA S+ K+
Sbjct: 1163 RLKKVFVVLHEELKHLKQRMRDYASSHGKD 1192
>gb|AAK64031.1| unknown protein [Arabidopsis thaliana]
Length = 1192
Score = 119 bits (299), Expect = 1e-26
Identities = 58/90 (64%), Positives = 75/90 (82%), Gaps = 2/90 (2%)
Frame = -1
Query: 494 EFRDKYDSYCSLHKILESYRNEFQKLGDKLEYAKGMD--RYYDIVEQLKESYRRCGPRHK 321
E+ DKYDSY S++KILES+RN+FQKLG L +AKG D RY IVEQ+KESY + G RHK
Sbjct: 1103 EYNDKYDSYHSINKILESHRNDFQKLGQDLGFAKGRDVERYNKIVEQIKESYCKYGERHK 1162
Query: 320 RLKKIFVVLHQELENIKQRIKDYAHSYTKE 231
RLKK+FVVLH+EL+++KQR++DYA S+ K+
Sbjct: 1163 RLKKVFVVLHEELKHLKQRMRDYASSHGKD 1192
>dbj|BAB01722.1| gene_id:MXL8.16~unknown protein [Arabidopsis thaliana]
Length = 1261
Score = 71.6 bits (174), Expect = 4e-12
Identities = 36/56 (64%), Positives = 44/56 (78%), Gaps = 2/56 (3%)
Frame = -1
Query: 494 EFRDKYDSYCSLHKILESYRNEFQKLGDKLEYAKGMD--RYYDIVEQLKESYRRCG 333
E+ DKYDSY S++KILES+RN+FQKLG L +AKG D RY IVEQ+KESY + G
Sbjct: 1200 EYNDKYDSYHSINKILESHRNDFQKLGQDLGFAKGRDVERYNKIVEQIKESYCKYG 1255
>gb|AAL13036.1| ELL [Drosophila melanogaster]
Length = 1060
Score = 45.1 bits (105), Expect = 4e-04
Identities = 30/90 (33%), Positives = 44/90 (48%), Gaps = 9/90 (10%)
Frame = -1
Query: 494 EFRDKYDSYCSLHKILESYRNEFQKLGDKLEYAKGMDRYYDIVEQLKESYRRCGPRHKRL 315
EF YD Y L +E RN FQ L ++LE A+ D Y + +K R+ ++R+
Sbjct: 849 EFESDYDEYRKLLTRVEDVRNRFQDLSERLESARRCDNGYGDYDHIK---RQIVCEYERI 905
Query: 314 ---------KKIFVVLHQELENIKQRIKDY 252
K+ F LH +L +IKQ + DY
Sbjct: 906 NNDRTIGEDKERFDYLHAKLAHIKQLVMDY 935
>ref|NP_649155.2| CG32217-PA [Drosophila melanogaster] gi|23093097|gb|AAF49098.2|
CG32217-PA [Drosophila melanogaster]
Length = 625
Score = 45.1 bits (105), Expect = 4e-04
Identities = 30/90 (33%), Positives = 44/90 (48%), Gaps = 9/90 (10%)
Frame = -1
Query: 494 EFRDKYDSYCSLHKILESYRNEFQKLGDKLEYAKGMDRYYDIVEQLKESYRRCGPRHKRL 315
EF YD Y L +E RN FQ L ++LE A+ D Y + +K R+ ++R+
Sbjct: 414 EFESDYDEYRKLLTRVEDVRNRFQDLSERLESARRCDNGYGDYDHIK---RQIVCEYERI 470
Query: 314 ---------KKIFVVLHQELENIKQRIKDY 252
K+ F LH +L +IKQ + DY
Sbjct: 471 NNDRTIGEDKERFDYLHAKLAHIKQLVMDY 500
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 403,544,418
Number of Sequences: 1393205
Number of extensions: 8261525
Number of successful extensions: 25312
Number of sequences better than 10.0: 58
Number of HSP's better than 10.0 without gapping: 24360
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25289
length of database: 448,689,247
effective HSP length: 114
effective length of database: 289,863,877
effective search space used: 14493193850
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
