Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000853A_C01 KMC000853A_c01
(553 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAH21887.1| Similar to paraoxonase 2 [Mus musculus] 33 2.3
ref|NP_477738.1| wsv216 [shrimp white spot syndrome virus] gi|17... 32 6.7
gb|AAL89139.1| WSSV271 [shrimp white spot syndrome virus] 32 6.7
gb|AAK77780.1|AF369029_111 ORF111 [shrimp white spot syndrome vi... 32 6.7
>gb|AAH21887.1| Similar to paraoxonase 2 [Mus musculus]
Length = 200
Score = 33.1 bits (74), Expect = 2.3
Identities = 15/28 (53%), Positives = 18/28 (63%)
Frame = +2
Query: 14 SLFFCFFCFLFFSHSNFNYPLYLPRYCF 97
S F FFC LFFS + F +PL L +Y F
Sbjct: 169 SSLFLFFCVLFFSKTYFIFPLLLYKYQF 196
>ref|NP_477738.1| wsv216 [shrimp white spot syndrome virus]
gi|17016614|gb|AAL33220.1| wsv216 [shrimp white spot
syndrome virus]
Length = 1194
Score = 31.6 bits (70), Expect = 6.7
Identities = 18/38 (47%), Positives = 22/38 (57%)
Frame = +3
Query: 33 FVFCFLATVISIIHYICQDIVLNNF*NTRNYESGMLHL 146
F F L ISII YI IV NNF T + SG++H+
Sbjct: 18 FEFTLLVVFISIISYIGMKIVQNNF--TPDERSGVIHI 53
>gb|AAL89139.1| WSSV271 [shrimp white spot syndrome virus]
Length = 1194
Score = 31.6 bits (70), Expect = 6.7
Identities = 18/38 (47%), Positives = 22/38 (57%)
Frame = +3
Query: 33 FVFCFLATVISIIHYICQDIVLNNF*NTRNYESGMLHL 146
F F L ISII YI IV NNF T + SG++H+
Sbjct: 18 FEFTLLVVFISIISYIGMKIVQNNF--TPDERSGVIHI 53
>gb|AAK77780.1|AF369029_111 ORF111 [shrimp white spot syndrome virus]
Length = 1194
Score = 31.6 bits (70), Expect = 6.7
Identities = 18/38 (47%), Positives = 22/38 (57%)
Frame = +3
Query: 33 FVFCFLATVISIIHYICQDIVLNNF*NTRNYESGMLHL 146
F F L ISII YI IV NNF T + SG++H+
Sbjct: 18 FEFTLLVVFISIISYIGMKIVQNNF--TPDERSGVIHI 53
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 478,413,724
Number of Sequences: 1393205
Number of extensions: 10422078
Number of successful extensions: 23620
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 22402
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23540
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 19234190289
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
