Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000851A_C01 KMC000851A_c01
(630 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAB64102.1| P0039A07.8 [Oryza sativa (japonica cultivar-grou... 150 2e-38
ref|NP_199807.1| putative protein; protein id: At5g49960.1 [Arab... 145 4e-34
gb|AAL32724.1| Unknown protein [Arabidopsis thaliana] gi|2025981... 68 9e-11
ref|NP_568628.1| Expressed protein; protein id: At5g43745.1, sup... 68 9e-11
gb|AAL36360.1| unknown protein [Arabidopsis thaliana] 67 2e-10
>dbj|BAB64102.1| P0039A07.8 [Oryza sativa (japonica cultivar-group)]
gi|20160875|dbj|BAB89814.1| P0677H08.29 [Oryza sativa
(japonica cultivar-group)]
Length = 927
Score = 150 bits (380), Expect(2) = 2e-38
Identities = 76/104 (73%), Positives = 92/104 (88%)
Frame = -3
Query: 628 EILDPXTKNLLSMSKISDYVLSNELVSMALAMVAEDRQINDVLEELFAEEGNEMHIRQAD 449
EILD T+NL+S+SKISDYVLSNELVSMALAMVAED+QIN VLEELFAEEGNEM IR A+
Sbjct: 806 EILDSRTRNLVSVSKISDYVLSNELVSMALAMVAEDKQINRVLEELFAEEGNEMCIRSAE 865
Query: 448 IYLREGEEMSFYEIMLRARQRREILIGYRLANAERAVINPPSKN 317
YL E EE+SF++IM+RAR+R E++IGYRLAN ++A+INP K+
Sbjct: 866 FYLYEQEELSFFDIMVRARERDEVVIGYRLANDDQAIINPEQKS 909
Score = 30.0 bits (66), Expect(2) = 2e-38
Identities = 13/23 (56%), Positives = 17/23 (73%)
Frame = -1
Query: 336 LTPPAKTGRRKWSLKDVFVVITE 268
+ P K+ RKWSL DVFVVI++
Sbjct: 903 INPEQKSEIRKWSLDDVFVVISK 925
>ref|NP_199807.1| putative protein; protein id: At5g49960.1 [Arabidopsis thaliana]
gi|8777427|dbj|BAA97017.1|
emb|CAB86048.1~gene_id:K9P8.10~similar to unknown protein
[Arabidopsis thaliana]
Length = 824
Score = 145 bits (366), Expect = 4e-34
Identities = 75/108 (69%), Positives = 92/108 (84%)
Frame = -3
Query: 628 EILDPXTKNLLSMSKISDYVLSNELVSMALAMVAEDRQINDVLEELFAEEGNEMHIRQAD 449
EILD TKNL+S+S+ISDYVLSNELVSMALAMVAED+QIN VL+ELFAE+GNE+ IR A+
Sbjct: 703 EILDSRTKNLVSVSRISDYVLSNELVSMALAMVAEDKQINRVLKELFAEKGNELCIRPAE 762
Query: 448 IYLREGEEMSFYEIMLRARQRREILIGYRLANAERAVINPPSKNWQTE 305
Y+ + EE+ FY+IM RARQR+EI+IGYRLA E+AVINP K+ T+
Sbjct: 763 FYIYDQEEVCFYDIMRRARQRQEIIIGYRLAGMEQAVINPTDKSKLTK 810
>gb|AAL32724.1| Unknown protein [Arabidopsis thaliana] gi|20259818|gb|AAM13256.1|
unknown protein [Arabidopsis thaliana]
Length = 470
Score = 68.2 bits (165), Expect = 9e-11
Identities = 34/105 (32%), Positives = 64/105 (60%), Gaps = 1/105 (0%)
Frame = -3
Query: 628 EILDPXT-KNLLSMSKISDYVLSNELVSMALAMVAEDRQINDVLEELFAEEGNEMHIRQA 452
EI+D K + + ++ + E++S+ A VAE+ ++N+V +++ +G+E++++
Sbjct: 343 EIVDSKLGKQITGLKPSLTFIAAEEVMSLVTAQVAENSELNEVWKDILDADGDEIYVKDV 402
Query: 451 DIYLREGEEMSFYEIMLRARQRREILIGYRLANAERAVINPPSKN 317
++Y++EGE SF E+ RA RRE+ IGY + +INP KN
Sbjct: 403 ELYMKEGENPSFTELSERAWLRREVAIGY--IKGGKKMINPVPKN 445
>ref|NP_568628.1| Expressed protein; protein id: At5g43745.1, supported by cDNA:
gi_15450497, supported by cDNA: gi_16974322 [Arabidopsis
thaliana] gi|15450498|gb|AAK96542.1| AT5g02940/F9G14_250
[Arabidopsis thaliana] gi|16974323|gb|AAL31146.1|
AT5g02940/F9G14_250 [Arabidopsis thaliana]
Length = 817
Score = 68.2 bits (165), Expect = 9e-11
Identities = 34/105 (32%), Positives = 64/105 (60%), Gaps = 1/105 (0%)
Frame = -3
Query: 628 EILDPXT-KNLLSMSKISDYVLSNELVSMALAMVAEDRQINDVLEELFAEEGNEMHIRQA 452
EI+D K + + ++ + E++S+ A VAE+ ++N+V +++ +G+E++++
Sbjct: 690 EIVDSKLGKQITGLKPSLTFIAAEEVMSLVTAQVAENSELNEVWKDILDADGDEIYVKDV 749
Query: 451 DIYLREGEEMSFYEIMLRARQRREILIGYRLANAERAVINPPSKN 317
++Y++EGE SF E+ RA RRE+ IGY + +INP KN
Sbjct: 750 ELYMKEGENPSFTELSERAWLRREVAIGY--IKGGKKMINPVPKN 792
>gb|AAL36360.1| unknown protein [Arabidopsis thaliana]
Length = 813
Score = 67.0 bits (162), Expect = 2e-10
Identities = 35/104 (33%), Positives = 64/104 (60%), Gaps = 1/104 (0%)
Frame = -3
Query: 628 EILDPXTKNLLSMSKIS-DYVLSNELVSMALAMVAEDRQINDVLEELFAEEGNEMHIRQA 452
EI+D ++ K S ++ + E++S+ A VAE+ ++N+V +++ EG+E++++
Sbjct: 686 EIVDTKLGKQITRLKPSLTFIAAEEVMSLVTAQVAENSELNEVWKDILDAEGDEIYVKDI 745
Query: 451 DIYLREGEEMSFYEIMLRARQRREILIGYRLANAERAVINPPSK 320
++Y++EGE SF E+ RA RRE+ IGY + +INP K
Sbjct: 746 ELYMKEGENPSFTELSERAWLRREVAIGY--IKGGKKIINPVPK 787
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 559,127,262
Number of Sequences: 1393205
Number of extensions: 12508293
Number of successful extensions: 30050
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 28877
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 29995
length of database: 448,689,247
effective HSP length: 118
effective length of database: 284,291,057
effective search space used: 25870486187
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
