Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000846A_C03 KMC000846A_c03
(699 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAL73979.1|AF466201_8 methionine synthase protein [Sorghum bi... 210 1e-53
emb|CAA89019.1| cobalamine-independent methionine synthase [Sole... 204 1e-51
sp|Q42662|METE_SOLSC 5-methyltetrahydropteroyltriglutamate--homo... 204 1e-51
gb|AAF74983.1|AF082893_1 methionine synthase [Solanum tuberosum] 204 1e-51
gb|AAL33589.1| methionine synthase [Zea mays] 203 2e-51
>gb|AAL73979.1|AF466201_8 methionine synthase protein [Sorghum bicolor]
Length = 760
Score = 210 bits (535), Expect = 1e-53
Identities = 104/111 (93%), Positives = 107/111 (95%)
Frame = -2
Query: 698 DIIHSIIDMDADVITIENSRSDEKLLSVFREGVKYGAGIGPGVYDIHSPRIPPTEEIADR 519
DIIHSIIDMDADVITIENSRSDEKLLSVFREGVKYGAGIGPGVYDIHSPRIP TEEIADR
Sbjct: 650 DIIHSIIDMDADVITIENSRSDEKLLSVFREGVKYGAGIGPGVYDIHSPRIPTTEEIADR 709
Query: 518 INKMLAVLETNILWVNPDCGLKTRKYTEVNPALTNMVAATKLIRNQLASGK 366
+NKMLAVL+TNILWVNPDCGLKTRKYTEV PALTNMV+ATKLIR QLAS K
Sbjct: 710 VNKMLAVLDTNILWVNPDCGLKTRKYTEVKPALTNMVSATKLIRTQLASAK 760
>emb|CAA89019.1| cobalamine-independent methionine synthase [Solenostemon
scutellarioides]
Length = 784
Score = 204 bits (519), Expect = 1e-51
Identities = 102/111 (91%), Positives = 104/111 (92%)
Frame = -2
Query: 698 DIIHSIIDMDADVITIENSRSDEKLLSVFREGVKYGAGIGPGVYDIHSPRIPPTEEIADR 519
DIIHSII+MDADVITIENSRSDEKLLSVFREGVKYGAGIGPGVYDIHSPRIP TEEIADR
Sbjct: 674 DIIHSIINMDADVITIENSRSDEKLLSVFREGVKYGAGIGPGVYDIHSPRIPSTEEIADR 733
Query: 518 INKMLAVLETNILWVNPDCGLKTRKYTEVNPALTNMVAATKLIRNQLASGK 366
INKMLAVLETNILWVNPDCGLKTRKY EV PAL NMVAA KL+R QLAS K
Sbjct: 734 INKMLAVLETNILWVNPDCGLKTRKYAEVKPALENMVAAAKLLRTQLASAK 784
>sp|Q42662|METE_SOLSC 5-methyltetrahydropteroyltriglutamate--homocysteine
methyltransferase (Vitamin-B12-independent methionine
synthase isozyme) (Cobalamin-independent methionine
synthase isozyme)
Length = 764
Score = 204 bits (519), Expect = 1e-51
Identities = 102/111 (91%), Positives = 104/111 (92%)
Frame = -2
Query: 698 DIIHSIIDMDADVITIENSRSDEKLLSVFREGVKYGAGIGPGVYDIHSPRIPPTEEIADR 519
DIIHSII+MDADVITIENSRSDEKLLSVFREGVKYGAGIGPGVYDIHSPRIP TEEIADR
Sbjct: 654 DIIHSIINMDADVITIENSRSDEKLLSVFREGVKYGAGIGPGVYDIHSPRIPSTEEIADR 713
Query: 518 INKMLAVLETNILWVNPDCGLKTRKYTEVNPALTNMVAATKLIRNQLASGK 366
INKMLAVLETNILWVNPDCGLKTRKY EV PAL NMVAA KL+R QLAS K
Sbjct: 714 INKMLAVLETNILWVNPDCGLKTRKYAEVKPALENMVAAAKLLRTQLASAK 764
>gb|AAF74983.1|AF082893_1 methionine synthase [Solanum tuberosum]
Length = 765
Score = 204 bits (519), Expect = 1e-51
Identities = 101/111 (90%), Positives = 104/111 (92%)
Frame = -2
Query: 698 DIIHSIIDMDADVITIENSRSDEKLLSVFREGVKYGAGIGPGVYDIHSPRIPPTEEIADR 519
DIIHSIIDMDADVITIENSRSDEKLLSVFREGVKYGAGIGPGVYDIHSPRIP TEEIADR
Sbjct: 655 DIIHSIIDMDADVITIENSRSDEKLLSVFREGVKYGAGIGPGVYDIHSPRIPSTEEIADR 714
Query: 518 INKMLAVLETNILWVNPDCGLKTRKYTEVNPALTNMVAATKLIRNQLASGK 366
+NKMLAVL+TNILWVNPDCGLKTRKYTEV PAL NMV+A K IR QLAS K
Sbjct: 715 VNKMLAVLDTNILWVNPDCGLKTRKYTEVKPALQNMVSAAKTIRTQLASAK 765
>gb|AAL33589.1| methionine synthase [Zea mays]
Length = 766
Score = 203 bits (517), Expect = 2e-51
Identities = 101/111 (90%), Positives = 104/111 (92%)
Frame = -2
Query: 698 DIIHSIIDMDADVITIENSRSDEKLLSVFREGVKYGAGIGPGVYDIHSPRIPPTEEIADR 519
DIIHSIIDMDADVITIENSRSDEKLLSVFREGVKYGAGIGPGVYDIHSPRIP EEIADR
Sbjct: 656 DIIHSIIDMDADVITIENSRSDEKLLSVFREGVKYGAGIGPGVYDIHSPRIPSAEEIADR 715
Query: 518 INKMLAVLETNILWVNPDCGLKTRKYTEVNPALTNMVAATKLIRNQLASGK 366
I+KMLAVL+TNILWVNPDCGLKTRKYTEV PALTNMV+A KLIR Q AS K
Sbjct: 716 IDKMLAVLDTNILWVNPDCGLKTRKYTEVKPALTNMVSAAKLIRTQFASAK 766
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 632,206,278
Number of Sequences: 1393205
Number of extensions: 14282586
Number of successful extensions: 40528
Number of sequences better than 10.0: 141
Number of HSP's better than 10.0 without gapping: 38519
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 40388
length of database: 448,689,247
effective HSP length: 119
effective length of database: 282,897,852
effective search space used: 31967457276
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
