Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000845A_C01 KMC000845A_c01
(510 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_680572.1| similar to protein phosphatase 2C (PP2C); prote... 146 1e-34
dbj|BAC42488.1| unknown protein [Arabidopsis thaliana] gi|289510... 146 1e-34
dbj|BAB84699.1| protein phosphatase 2C [Arabidopsis thaliana] 135 2e-31
gb|AAF86530.1|AC002560_23 F21B7.20 [Arabidopsis thaliana] 135 2e-31
ref|NP_171856.1| protein phosphatase 2C (PP2C); protein id: At1g... 135 2e-31
>ref|NP_680572.1| similar to protein phosphatase 2C (PP2C); protein id: At4g03415.1
[Arabidopsis thaliana]
Length = 453
Score = 146 bits (369), Expect = 1e-34
Identities = 81/123 (65%), Positives = 90/123 (72%), Gaps = 3/123 (2%)
Frame = -1
Query: 510 REWRLKYPTSKMDDCAVVCLFLDGQMDSEFECDEPCFSSATIQANPSGNPAESDEGQKSE 331
REW+LKYPTSKMDDCAVVCLFLDG+MDSE + DE FSSAT N ESD+GQ+SE
Sbjct: 336 REWKLKYPTSKMDDCAVVCLFLDGKMDSESDYDEQGFSSAT-------NAVESDDGQRSE 388
Query: 330 PSLQRNNTVRSS---EDETSGGRGVGVVAEDGTSSAEDPNWSGLEGVTRVNSLVQLPRFS 160
P LQRN TVRSS E+ET G AED + D NW GL+GVTRVNSLVQLPRFS
Sbjct: 389 PCLQRNFTVRSSSDQENETYGNVNTETDAED-EKTVGDQNWLGLQGVTRVNSLVQLPRFS 447
Query: 159 EER 151
EE+
Sbjct: 448 EEK 450
>dbj|BAC42488.1| unknown protein [Arabidopsis thaliana] gi|28951049|gb|AAO63448.1|
At4g03415 [Arabidopsis thaliana]
Length = 468
Score = 146 bits (369), Expect = 1e-34
Identities = 81/123 (65%), Positives = 90/123 (72%), Gaps = 3/123 (2%)
Frame = -1
Query: 510 REWRLKYPTSKMDDCAVVCLFLDGQMDSEFECDEPCFSSATIQANPSGNPAESDEGQKSE 331
REW+LKYPTSKMDDCAVVCLFLDG+MDSE + DE FSSAT N ESD+GQ+SE
Sbjct: 351 REWKLKYPTSKMDDCAVVCLFLDGKMDSESDYDEQGFSSAT-------NAVESDDGQRSE 403
Query: 330 PSLQRNNTVRSS---EDETSGGRGVGVVAEDGTSSAEDPNWSGLEGVTRVNSLVQLPRFS 160
P LQRN TVRSS E+ET G AED + D NW GL+GVTRVNSLVQLPRFS
Sbjct: 404 PCLQRNFTVRSSSDQENETYGNVNTETDAED-EKTVGDQNWLGLQGVTRVNSLVQLPRFS 462
Query: 159 EER 151
EE+
Sbjct: 463 EEK 465
>dbj|BAB84699.1| protein phosphatase 2C [Arabidopsis thaliana]
Length = 420
Score = 135 bits (341), Expect = 2e-31
Identities = 76/129 (58%), Positives = 86/129 (65%), Gaps = 6/129 (4%)
Frame = -1
Query: 510 REWRLKYPTSKMDDCAVVCLFLDGQMDSE-FECDEPCFSSATIQANPSGNPAESDEGQKS 334
REW+LKYPTSKMDDCAVVCLFLDG+MDSE + +E CFSSAT N ESDE Q +
Sbjct: 299 REWKLKYPTSKMDDCAVVCLFLDGRMDSETSDNEEQCFSSAT-------NAVESDESQGA 351
Query: 333 EPSLQRNNTVRSSEDETSGGRGVGVVAEDGTSSAE-----DPNWSGLEGVTRVNSLVQLP 169
EP LQRN TVRS + V+AE + E + NWSGLEGVTRVNSLVQLP
Sbjct: 352 EPCLQRNVTVRSLSTDQENNSYGKVIAEADNAEKEKTREGEQNWSGLEGVTRVNSLVQLP 411
Query: 168 RFSEERPNS 142
RF E P +
Sbjct: 412 RFPGEEPKT 420
>gb|AAF86530.1|AC002560_23 F21B7.20 [Arabidopsis thaliana]
Length = 462
Score = 135 bits (341), Expect = 2e-31
Identities = 76/129 (58%), Positives = 86/129 (65%), Gaps = 6/129 (4%)
Frame = -1
Query: 510 REWRLKYPTSKMDDCAVVCLFLDGQMDSE-FECDEPCFSSATIQANPSGNPAESDEGQKS 334
REW+LKYPTSKMDDCAVVCLFLDG+MDSE + +E CFSSAT N ESDE Q +
Sbjct: 341 REWKLKYPTSKMDDCAVVCLFLDGRMDSETSDNEEQCFSSAT-------NAVESDESQGA 393
Query: 333 EPSLQRNNTVRSSEDETSGGRGVGVVAEDGTSSAE-----DPNWSGLEGVTRVNSLVQLP 169
EP LQRN TVRS + V+AE + E + NWSGLEGVTRVNSLVQLP
Sbjct: 394 EPCLQRNVTVRSLSTDQENNSYGKVIAEADNAEKEKTREGEQNWSGLEGVTRVNSLVQLP 453
Query: 168 RFSEERPNS 142
RF E P +
Sbjct: 454 RFPGEEPKT 462
>ref|NP_171856.1| protein phosphatase 2C (PP2C); protein id: At1g03590.1 [Arabidopsis
thaliana]
Length = 447
Score = 135 bits (341), Expect = 2e-31
Identities = 76/129 (58%), Positives = 86/129 (65%), Gaps = 6/129 (4%)
Frame = -1
Query: 510 REWRLKYPTSKMDDCAVVCLFLDGQMDSE-FECDEPCFSSATIQANPSGNPAESDEGQKS 334
REW+LKYPTSKMDDCAVVCLFLDG+MDSE + +E CFSSAT N ESDE Q +
Sbjct: 326 REWKLKYPTSKMDDCAVVCLFLDGRMDSETSDNEEQCFSSAT-------NAVESDESQGA 378
Query: 333 EPSLQRNNTVRSSEDETSGGRGVGVVAEDGTSSAE-----DPNWSGLEGVTRVNSLVQLP 169
EP LQRN TVRS + V+AE + E + NWSGLEGVTRVNSLVQLP
Sbjct: 379 EPCLQRNVTVRSLSTDQENNSYGKVIAEADNAEKEKTREGEQNWSGLEGVTRVNSLVQLP 438
Query: 168 RFSEERPNS 142
RF E P +
Sbjct: 439 RFPGEEPKT 447
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 428,875,748
Number of Sequences: 1393205
Number of extensions: 9006170
Number of successful extensions: 40267
Number of sequences better than 10.0: 89
Number of HSP's better than 10.0 without gapping: 37768
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 40118
length of database: 448,689,247
effective HSP length: 114
effective length of database: 289,863,877
effective search space used: 15942513235
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
