Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000843A_C01 KMC000843A_c01
(553 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_177507.1| putative protein kinase; protein id: At1g73660.... 67 1e-10
gb|AAM20478.1| putative protein kinase [Arabidopsis thaliana] 67 1e-10
pir||F86316 protein T10O22.13 [imported] - Arabidopsis thaliana ... 54 1e-06
ref|NP_173254.2| MAP kinase, putative; protein id: At1g18160.1, ... 54 1e-06
gb|AAM20643.1| MAP kinase, putative [Arabidopsis thaliana] 54 1e-06
>ref|NP_177507.1| putative protein kinase; protein id: At1g73660.1, supported by cDNA:
gi_20466321 [Arabidopsis thaliana]
gi|25406282|pir||F96763 hypothetical protein F25P22.8
[imported] - Arabidopsis thaliana
gi|12324203|gb|AAG52069.1|AC012679_7 putative protein
kinase; 24662-20191 [Arabidopsis thaliana]
Length = 1030
Score = 67.0 bits (162), Expect = 1e-10
Identities = 28/43 (65%), Positives = 37/43 (85%)
Frame = -3
Query: 551 EIVRKCWQTDSKLRPTFAEILATLKPLQKQIVGSQVPRPVASA 423
+++ KCWQTDSKLRP+FAEI+A+LK LQK + GS +PRPV S+
Sbjct: 977 DLISKCWQTDSKLRPSFAEIMASLKRLQKPVTGSNIPRPVPSS 1019
>gb|AAM20478.1| putative protein kinase [Arabidopsis thaliana]
Length = 1030
Score = 67.0 bits (162), Expect = 1e-10
Identities = 28/43 (65%), Positives = 37/43 (85%)
Frame = -3
Query: 551 EIVRKCWQTDSKLRPTFAEILATLKPLQKQIVGSQVPRPVASA 423
+++ KCWQTDSKLRP+FAEI+A+LK LQK + GS +PRPV S+
Sbjct: 977 DLISKCWQTDSKLRPSFAEIMASLKRLQKPVTGSNIPRPVPSS 1019
>pir||F86316 protein T10O22.13 [imported] - Arabidopsis thaliana
gi|8671767|gb|AAF78373.1|AC069551_6 T10O22.13
[Arabidopsis thaliana]
Length = 988
Score = 53.9 bits (128), Expect = 1e-06
Identities = 25/49 (51%), Positives = 33/49 (67%)
Frame = -3
Query: 551 EIVRKCWQTDSKLRPTFAEILATLKPLQKQIVGSQVPRPVASARQEKAQ 405
+I+RKCWQTD +LRP+F EI+ +LK LQK I + VP A E+ Q
Sbjct: 940 DIIRKCWQTDPRLRPSFGEIMDSLKQLQKPIQRAAVPSSSALTTDEQEQ 988
>ref|NP_173254.2| MAP kinase, putative; protein id: At1g18160.1, supported by cDNA:
gi_20466651 [Arabidopsis thaliana]
Length = 992
Score = 53.9 bits (128), Expect = 1e-06
Identities = 25/49 (51%), Positives = 33/49 (67%)
Frame = -3
Query: 551 EIVRKCWQTDSKLRPTFAEILATLKPLQKQIVGSQVPRPVASARQEKAQ 405
+I+RKCWQTD +LRP+F EI+ +LK LQK I + VP A E+ Q
Sbjct: 944 DIIRKCWQTDPRLRPSFGEIMDSLKQLQKPIQRAAVPSSSALTTDEQEQ 992
>gb|AAM20643.1| MAP kinase, putative [Arabidopsis thaliana]
Length = 992
Score = 53.9 bits (128), Expect = 1e-06
Identities = 25/49 (51%), Positives = 33/49 (67%)
Frame = -3
Query: 551 EIVRKCWQTDSKLRPTFAEILATLKPLQKQIVGSQVPRPVASARQEKAQ 405
+I+RKCWQTD +LRP+F EI+ +LK LQK I + VP A E+ Q
Sbjct: 944 DIIRKCWQTDPRLRPSFGEIMDSLKQLQKPIQRAAVPSSSALTTDEQEQ 992
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 453,306,977
Number of Sequences: 1393205
Number of extensions: 9704858
Number of successful extensions: 43732
Number of sequences better than 10.0: 213
Number of HSP's better than 10.0 without gapping: 37144
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 42359
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 19234190289
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
