Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000836A_C01 KMC000836A_c01
(568 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAB64102.1| P0039A07.8 [Oryza sativa (japonica cultivar-grou... 69 3e-11
ref|NP_199807.1| putative protein; protein id: At5g49960.1 [Arab... 64 1e-09
emb|CAC84918.1| phosphoenolpyruvate carboxylase, isoform 1 [Cyca... 32 5.5
>dbj|BAB64102.1| P0039A07.8 [Oryza sativa (japonica cultivar-group)]
gi|20160875|dbj|BAB89814.1| P0677H08.29 [Oryza sativa
(japonica cultivar-group)]
Length = 927
Score = 69.3 bits (168), Expect = 3e-11
Identities = 31/48 (64%), Positives = 38/48 (78%)
Frame = -1
Query: 568 MIRGRARQEIIIGYRLANQERAIINPSEKLVARKWSLGDVFVVIASGD 425
M+R R R E++IGYRLAN ++AIINP +K RKWSL DVFVVI+ GD
Sbjct: 880 MVRARERDEVVIGYRLANDDQAIINPEQKSEIRKWSLDDVFVVISKGD 927
>ref|NP_199807.1| putative protein; protein id: At5g49960.1 [Arabidopsis thaliana]
gi|8777427|dbj|BAA97017.1|
emb|CAB86048.1~gene_id:K9P8.10~similar to unknown
protein [Arabidopsis thaliana]
Length = 824
Score = 64.3 bits (155), Expect = 1e-09
Identities = 32/46 (69%), Positives = 36/46 (77%)
Frame = -1
Query: 568 MIRGRARQEIIIGYRLANQERAIINPSEKLVARKWSLGDVFVVIAS 431
M R R RQEIIIGYRLA E+A+INP++K KWSL DVFVVIAS
Sbjct: 777 MRRARQRQEIIIGYRLAGMEQAVINPTDKSKLTKWSLDDVFVVIAS 822
>emb|CAC84918.1| phosphoenolpyruvate carboxylase, isoform 1 [Cycas revoluta]
Length = 331
Score = 32.0 bits (71), Expect = 5.5
Identities = 16/58 (27%), Positives = 28/58 (47%)
Frame = +3
Query: 114 LLIPSQLTTNVYVMKDYCTSYNCVTSVVFHIKSRDNQYLQGSLNGHNMFLSLLRSLQI 287
L+ P + + KD+C + CV V H K +NQ + ++ +L+ L LQ+
Sbjct: 246 LVSPGRQQLGSKIHKDFCATEQCVLLVTGHQKLSENQGTERLIDNRLPYLNTLNMLQV 303
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 449,750,568
Number of Sequences: 1393205
Number of extensions: 9055894
Number of successful extensions: 20057
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 19569
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20054
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 20669577624
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
