Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000833A_C01 KMC000833A_c01
(540 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_192203.1| hypothetical protein; protein id: At4g02940.1, ... 62 4e-09
ref|NP_182329.1| unknown protein; protein id: At2g48080.1 [Arabi... 53 2e-06
ref|NP_419152.1| conserved hypothetical protein [Caulobacter cre... 32 3.8
ref|NP_566269.1| expressed protein; protein id: At3g06070.1, sup... 32 4.9
gb|AAF66135.1| unknown protein; 17421-16886 [Arabidopsis thaliana] 32 4.9
>ref|NP_192203.1| hypothetical protein; protein id: At4g02940.1, supported by cDNA:
gi_20260287 [Arabidopsis thaliana]
gi|7487648|pir||T01399 hypothetical protein T4I9.18 -
Arabidopsis thaliana gi|3924611|gb|AAC79112.1|
hypothetical protein [Arabidopsis thaliana]
gi|7269779|emb|CAB77779.1| hypothetical protein
[Arabidopsis thaliana] gi|20260288|gb|AAM13042.1|
unknown protein [Arabidopsis thaliana]
gi|22136492|gb|AAM91324.1| unknown protein [Arabidopsis
thaliana]
Length = 569
Score = 62.0 bits (149), Expect = 4e-09
Identities = 40/74 (54%), Positives = 42/74 (56%), Gaps = 10/74 (13%)
Frame = -1
Query: 540 MRPMPLNPRKL-------AGGGTGVFLPWNV--PSRKPAKHLPPRAQKGRLLALPSPAEP 388
M P P+ P L GGGTGVFLPW SRK KHLPPRAQK RLL LP A
Sbjct: 495 MAPPPVQPMILPSPNVMGTGGGTGVFLPWASVNSSRKHVKHLPPRAQKKRLLPLPPAASS 554
Query: 387 H-MGESSSEPSICV 349
G S+SEP I V
Sbjct: 555 SPAGGSTSEPVITV 568
>ref|NP_182329.1| unknown protein; protein id: At2g48080.1 [Arabidopsis thaliana]
gi|25409091|pir||B84923 hypothetical protein At2g48080
[imported] - Arabidopsis thaliana
gi|4249414|gb|AAD13711.1| unknown protein [Arabidopsis
thaliana]
Length = 433
Score = 53.1 bits (126), Expect = 2e-06
Identities = 32/58 (55%), Positives = 37/58 (63%), Gaps = 1/58 (1%)
Frame = -1
Query: 519 PRKLAGGGTGVFLPWNVP-SRKPAKHLPPRAQKGRLLALPSPAEPHMGESSSEPSICV 349
P++L GTGVFLPW P SRKPAKHLPPR Q+ RLL S ++ SS P I V
Sbjct: 379 PKRL-DAGTGVFLPWTPPVSRKPAKHLPPRVQRLRLL---SSSKSVADSESSSPEIGV 432
>ref|NP_419152.1| conserved hypothetical protein [Caulobacter crescentus CB15]
gi|25398650|pir||D87290 conserved hypothetical protein
CC0333 [imported] - Caulobacter crescentus
gi|13421480|gb|AAK22320.1| conserved hypothetical
protein [Caulobacter crescentus CB15]
Length = 483
Score = 32.3 bits (72), Expect = 3.8
Identities = 18/54 (33%), Positives = 27/54 (49%), Gaps = 5/54 (9%)
Frame = -3
Query: 340 RTCLVLKQPWVQRNVNQER-----WLSHLTTLFVVQTRNGLSKMLLEEFGSFFF 194
R+ +++ QPWVQ ++ W L T +V +N LSK + E FFF
Sbjct: 243 RSLVIILQPWVQEGMSMPIATNMVWRPELGTKVLVLDKNDLSKRRVFELPPFFF 296
>ref|NP_566269.1| expressed protein; protein id: At3g06070.1, supported by cDNA:
153279. [Arabidopsis thaliana]
gi|21553612|gb|AAM62705.1| unknown [Arabidopsis
thaliana]
Length = 151
Score = 32.0 bits (71), Expect = 4.9
Identities = 15/46 (32%), Positives = 25/46 (53%), Gaps = 2/46 (4%)
Frame = -1
Query: 498 GTGVFLPWNVPSRKPAKHLPPRAQKGRLLA--LPSPAEPHMGESSS 367
GTGVF+P + R+ H P + ++GR + +P PH G ++
Sbjct: 73 GTGVFIPRSSQPRRKHNHHPHQKKQGRFIGSFIPKQQFPHHGHDNN 118
>gb|AAF66135.1| unknown protein; 17421-16886 [Arabidopsis thaliana]
Length = 149
Score = 32.0 bits (71), Expect = 4.9
Identities = 15/46 (32%), Positives = 25/46 (53%), Gaps = 2/46 (4%)
Frame = -1
Query: 498 GTGVFLPWNVPSRKPAKHLPPRAQKGRLLA--LPSPAEPHMGESSS 367
GTGVF+P + R+ H P + ++GR + +P PH G ++
Sbjct: 71 GTGVFIPRSSQPRRKHNHHPHQKKQGRFIGSFIPKQQFPHHGHDNN 116
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 509,760,837
Number of Sequences: 1393205
Number of extensions: 11677105
Number of successful extensions: 32538
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 30883
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 32507
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 18462123008
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
