Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000832A_C01 KMC000832A_c01
(470 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|EAA22565.1| Var1p [Plasmodium yoelii yoelii] 33 2.0
pir||G71607 probable integral membrane protein PFB0735c - malari... 32 2.6
ref|NP_473075.2| hypothetical protein [Plasmodium falciparum 3D7... 32 2.6
ref|NP_506809.1| 7 transmembrane receptor family member [Caenorh... 30 9.7
ref|NP_704939.1| hypothetical protein [Plasmodium falciparum 3D7... 30 9.7
>gb|EAA22565.1| Var1p [Plasmodium yoelii yoelii]
Length = 548
Score = 32.7 bits (73), Expect = 2.0
Identities = 18/45 (40%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
Frame = +3
Query: 147 KYH-IFETLALDEILTQNRNDVIFSSLNNWKKKRGIKLSPSLYKH 278
KY+ I+ D+IL N+ I+S+LN +KK+ I PSL H
Sbjct: 445 KYNSIYNYTTNDKILVNYDNNDIYSNLNEERKKKNIDCDPSLIPH 489
>pir||G71607 probable integral membrane protein PFB0735c - malaria parasite
(Plasmodium falciparum)
Length = 1182
Score = 32.3 bits (72), Expect = 2.6
Identities = 23/91 (25%), Positives = 42/91 (45%), Gaps = 15/91 (16%)
Frame = +3
Query: 90 MNNKYGDYNTN*VPQKHK------LKYHIFETLALDEILTQNRNDVIFSSLNNWKKKRGI 251
+NN Y Y N + HK L YH ++ + L N N++I++++NN +K +
Sbjct: 1025 INNYYNIYTHNLFNRVHKSRLILILIYHFLFIISSNN-LHNNNNNIIYNNINNIQKSNSV 1083
Query: 252 KLSPSLYKHQAEIY---------LFRDQMIC 317
+ + K + +Y L++ MIC
Sbjct: 1084 NTNFTNIKEDSLLYKIKNKYLFLLYQTYMIC 1114
>ref|NP_473075.2| hypothetical protein [Plasmodium falciparum 3D7]
gi|23503415|gb|AAC71936.2| hypothetical protein
[Plasmodium falciparum 3D7]
Length = 1377
Score = 32.3 bits (72), Expect = 2.6
Identities = 23/91 (25%), Positives = 42/91 (45%), Gaps = 15/91 (16%)
Frame = +3
Query: 90 MNNKYGDYNTN*VPQKHK------LKYHIFETLALDEILTQNRNDVIFSSLNNWKKKRGI 251
+NN Y Y N + HK L YH ++ + L N N++I++++NN +K +
Sbjct: 1220 INNYYNIYTHNLFNRVHKSRLILILIYHFLFIISSNN-LHNNNNNIIYNNINNIQKSNSV 1278
Query: 252 KLSPSLYKHQAEIY---------LFRDQMIC 317
+ + K + +Y L++ MIC
Sbjct: 1279 NTNFTNIKEDSLLYKIKNKYLFLLYQTYMIC 1309
>ref|NP_506809.1| 7 transmembrane receptor family member [Caenorhabditis elegans]
gi|7496670|pir||T19561 hypothetical protein C29F3.6 -
Caenorhabditis elegans gi|3874568|emb|CAB02802.1|
Hypothetical protein C29F3.6 [Caenorhabditis elegans]
Length = 308
Score = 30.4 bits (67), Expect = 9.7
Identities = 22/77 (28%), Positives = 36/77 (46%), Gaps = 2/77 (2%)
Frame = -2
Query: 400 IDATSVY*FQKDN*LV--MVMTQHAIS*TSQIIWSLKRYISAWCLYREGLSLIPLFFFQL 227
+D V+ FQ++ + +V H +S + I SL R+IS WC P+F+ +
Sbjct: 68 MDFLDVFLFQENVFIFGFLVAVFHDVSVLTHFIISLNRFISVWC---------PIFYKTM 118
Query: 226 FKELKITSFLFCVSISS 176
F F+F V + S
Sbjct: 119 FNLKYTKLFIFAVWLIS 135
>ref|NP_704939.1| hypothetical protein [Plasmodium falciparum 3D7]
gi|23615184|emb|CAD52174.1| hypothetical protein
[Plasmodium falciparum 3D7]
Length = 1039
Score = 30.4 bits (67), Expect = 9.7
Identities = 26/90 (28%), Positives = 44/90 (48%), Gaps = 1/90 (1%)
Frame = +3
Query: 93 NNKYGDYNTN*VPQKHKLKYHIFETLALD-EILTQNRNDVIFSSLNNWKKKRGIKLSPSL 269
NN N + QK K+KY F+ ++D E L N++ S+ + WKK++ +S +L
Sbjct: 650 NNNKSTILQNIIMQK-KMKY-AFDVTSIDFENLYTENNNIELSTYDLWKKEKKKYVSNAL 707
Query: 270 YKHQAEIYLFRDQMICEV*LIACCVITITN 359
+ Y+F + C CV T+T+
Sbjct: 708 FCIDQTSYIFDTRENC-----VNCVNTVTD 732
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 373,326,373
Number of Sequences: 1393205
Number of extensions: 7286849
Number of successful extensions: 15247
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 14802
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15240
length of database: 448,689,247
effective HSP length: 113
effective length of database: 291,257,082
effective search space used: 12524054526
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
