Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000828A_C01 KMC000828A_c01
(658 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAF18411.1|AF190652_1 putative integral membrane protein [Pha... 282 2e-75
gb|AAK94784.1| Sec61 alpha subunit [Hordeum vulgare] 271 6e-72
gb|AAF80449.1|AF161718_1 Sec61p [Triticum aestivum] 269 2e-71
gb|AAM13046.1| putative protein transport protein SEC61 alpha su... 266 1e-70
ref|NP_174225.1| flower pigmentation protein ATAN11; protein id:... 266 1e-70
>gb|AAF18411.1|AF190652_1 putative integral membrane protein [Phaseolus vulgaris]
Length = 476
Score = 282 bits (722), Expect = 2e-75
Identities = 141/144 (97%), Positives = 142/144 (97%)
Frame = -1
Query: 658 GGGHSIPVGGIAYYITAPSSLADMAANPFHALFYLVFMLSACALFSKTWIEVSGSSARDV 479
GGG S PVGGIAYYITAPSSLADMAANPFHALFYLVFMLSACALFSKTWIEVSGSSA+DV
Sbjct: 333 GGGQSAPVGGIAYYITAPSSLADMAANPFHALFYLVFMLSACALFSKTWIEVSGSSAKDV 392
Query: 478 AKQLKEQQMVMPGHRESNLQKELNRYIPTAAAFGGICIGALTVLADFMGAIGSGTGILLA 299
AKQLKEQQMVMPGHRESNLQKELNRYIPTAAAFGGICIGALTVLADFMGAIGSGTGILLA
Sbjct: 393 AKQLKEQQMVMPGHRESNLQKELNRYIPTAAAFGGICIGALTVLADFMGAIGSGTGILLA 452
Query: 298 VTIIYQYFETFEKERASELGFFGF 227
VTIIYQYFETFEKERASELGFFGF
Sbjct: 453 VTIIYQYFETFEKERASELGFFGF 476
>gb|AAK94784.1| Sec61 alpha subunit [Hordeum vulgare]
Length = 475
Score = 271 bits (693), Expect = 6e-72
Identities = 131/142 (92%), Positives = 140/142 (98%)
Frame = -1
Query: 652 GHSIPVGGIAYYITAPSSLADMAANPFHALFYLVFMLSACALFSKTWIEVSGSSARDVAK 473
GHSIPVGG+AYY+TAPSSLAD+ ANPFHALFY+VFMLSACALFSKTWIEVSGSSARDVA+
Sbjct: 334 GHSIPVGGLAYYVTAPSSLADVVANPFHALFYVVFMLSACALFSKTWIEVSGSSARDVAR 393
Query: 472 QLKEQQMVMPGHRESNLQKELNRYIPTAAAFGGICIGALTVLADFMGAIGSGTGILLAVT 293
QLKEQQMVMPGHRESNL++ELNRYIPTAAA GG+CIGALTVLADFMGAIGSGTGILLAVT
Sbjct: 394 QLKEQQMVMPGHRESNLERELNRYIPTAAAIGGVCIGALTVLADFMGAIGSGTGILLAVT 453
Query: 292 IIYQYFETFEKERASELGFFGF 227
IIYQYFETFEKERA+ELGFFGF
Sbjct: 454 IIYQYFETFEKERATELGFFGF 475
>gb|AAF80449.1|AF161718_1 Sec61p [Triticum aestivum]
Length = 475
Score = 269 bits (688), Expect = 2e-71
Identities = 130/142 (91%), Positives = 140/142 (98%)
Frame = -1
Query: 652 GHSIPVGGIAYYITAPSSLADMAANPFHALFYLVFMLSACALFSKTWIEVSGSSARDVAK 473
GHSIPVGG+AYY+TAPSS+AD+ ANPFHALFY+VFMLSACALFSKTWIEVSGSSA+DVAK
Sbjct: 334 GHSIPVGGLAYYVTAPSSMADILANPFHALFYVVFMLSACALFSKTWIEVSGSSAKDVAK 393
Query: 472 QLKEQQMVMPGHRESNLQKELNRYIPTAAAFGGICIGALTVLADFMGAIGSGTGILLAVT 293
QLKEQQMVMPGHRESNLQKELN+YIPTAAAFGG+CIGALTVLADFMGAIGSGTGILLA +
Sbjct: 394 QLKEQQMVMPGHRESNLQKELNKYIPTAAAFGGVCIGALTVLADFMGAIGSGTGILLADS 453
Query: 292 IIYQYFETFEKERASELGFFGF 227
IIYQYFETFEKERA+ELGFFGF
Sbjct: 454 IIYQYFETFEKERATELGFFGF 475
>gb|AAM13046.1| putative protein transport protein SEC61 alpha subunit [Arabidopsis
thaliana]
Length = 475
Score = 266 bits (681), Expect = 1e-70
Identities = 131/142 (92%), Positives = 138/142 (96%)
Frame = -1
Query: 652 GHSIPVGGIAYYITAPSSLADMAANPFHALFYLVFMLSACALFSKTWIEVSGSSARDVAK 473
G SIPV G+AY ITAP+S ADMAA+PFHALFY+VFML+ACALFSKTWIEVSGSSARDVAK
Sbjct: 334 GQSIPVSGLAYLITAPASFADMAAHPFHALFYIVFMLTACALFSKTWIEVSGSSARDVAK 393
Query: 472 QLKEQQMVMPGHRESNLQKELNRYIPTAAAFGGICIGALTVLADFMGAIGSGTGILLAVT 293
QLKEQQMVMPGHRESNLQKELNRYIPTAAAFGG+CIGALTVLADFMGAIGSGTGILLAVT
Sbjct: 394 QLKEQQMVMPGHRESNLQKELNRYIPTAAAFGGVCIGALTVLADFMGAIGSGTGILLAVT 453
Query: 292 IIYQYFETFEKERASELGFFGF 227
IIYQYFETFEKE+ASELGFFGF
Sbjct: 454 IIYQYFETFEKEKASELGFFGF 475
>ref|NP_174225.1| flower pigmentation protein ATAN11; protein id: At1g29310.1,
supported by cDNA: 36037., supported by cDNA:
gi_20260295 [Arabidopsis thaliana]
gi|25307860|pir||F86415 probable protein transport
protein SEC61 alpha chain - Arabidopsis thaliana
gi|9502410|gb|AAF88109.1|AC021043_2 Putative protein
transport protein SEC61 alpha subunit [Arabidopsis
thaliana]
Length = 475
Score = 266 bits (681), Expect = 1e-70
Identities = 131/142 (92%), Positives = 138/142 (96%)
Frame = -1
Query: 652 GHSIPVGGIAYYITAPSSLADMAANPFHALFYLVFMLSACALFSKTWIEVSGSSARDVAK 473
G SIPV G+AY ITAP+S ADMAA+PFHALFY+VFML+ACALFSKTWIEVSGSSARDVAK
Sbjct: 334 GQSIPVSGLAYLITAPASFADMAAHPFHALFYIVFMLTACALFSKTWIEVSGSSARDVAK 393
Query: 472 QLKEQQMVMPGHRESNLQKELNRYIPTAAAFGGICIGALTVLADFMGAIGSGTGILLAVT 293
QLKEQQMVMPGHRESNLQKELNRYIPTAAAFGG+CIGALTVLADFMGAIGSGTGILLAVT
Sbjct: 394 QLKEQQMVMPGHRESNLQKELNRYIPTAAAFGGVCIGALTVLADFMGAIGSGTGILLAVT 453
Query: 292 IIYQYFETFEKERASELGFFGF 227
IIYQYFETFEKE+ASELGFFGF
Sbjct: 454 IIYQYFETFEKEKASELGFFGF 475
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 553,339,366
Number of Sequences: 1393205
Number of extensions: 11661477
Number of successful extensions: 32860
Number of sequences better than 10.0: 104
Number of HSP's better than 10.0 without gapping: 31530
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 32797
length of database: 448,689,247
effective HSP length: 119
effective length of database: 282,897,852
effective search space used: 28006887348
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
