Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000826A_C01 KMC000826A_c01
(687 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAM61053.1| AtPH1-like protein [Arabidopsis thaliana] 193 2e-48
ref|NP_196190.1| AtPH1-like protein; protein id: At5g05710.1, su... 191 8e-48
dbj|BAB63699.1| P0683F02.2 [Oryza sativa (japonica cultivar-grou... 187 1e-46
ref|NP_565687.1| expressed protein; protein id: At2g29700.1, sup... 167 2e-40
pir||T52471 hypothetical protein AtPH1 [imported] - Arabidopsis ... 167 2e-40
>gb|AAM61053.1| AtPH1-like protein [Arabidopsis thaliana]
Length = 144
Score = 193 bits (490), Expect = 2e-48
Identities = 93/104 (89%), Positives = 100/104 (95%)
Frame = -1
Query: 687 EYIKTWRRRWFVLKQGKLFWFKDSAVTRVSKPRGVVPVASCLTVKGAEDVLHKPYAFELS 508
EYIKTWRRRWFVLKQGKLFWFKDS VTRVS+PRGVVPVASCLT KGAEDVL+K AFELS
Sbjct: 39 EYIKTWRRRWFVLKQGKLFWFKDSDVTRVSRPRGVVPVASCLTAKGAEDVLNKQNAFELS 98
Query: 507 TRSDTMYFIADSDKEKEDWINSIGRSIVQHSRSVTDSEIVDYDS 376
TR++TMYFIADS+KEKEDWINSIGRSIVQ+SRSVTDSEIVDYD+
Sbjct: 99 TRNETMYFIADSEKEKEDWINSIGRSIVQNSRSVTDSEIVDYDN 142
>ref|NP_196190.1| AtPH1-like protein; protein id: At5g05710.1, supported by cDNA:
109246. [Arabidopsis thaliana]
gi|9759096|dbj|BAB09665.1| AtPH1-like protein
[Arabidopsis thaliana]
Length = 144
Score = 191 bits (485), Expect = 8e-48
Identities = 92/104 (88%), Positives = 99/104 (94%)
Frame = -1
Query: 687 EYIKTWRRRWFVLKQGKLFWFKDSAVTRVSKPRGVVPVASCLTVKGAEDVLHKPYAFELS 508
EYIKTWRRRWFVLKQGKLFWFKDS VTRVS+PRGVVPV SCLT KGAEDVL+K AFELS
Sbjct: 39 EYIKTWRRRWFVLKQGKLFWFKDSDVTRVSRPRGVVPVESCLTAKGAEDVLNKQNAFELS 98
Query: 507 TRSDTMYFIADSDKEKEDWINSIGRSIVQHSRSVTDSEIVDYDS 376
TR++TMYFIADS+KEKEDWINSIGRSIVQ+SRSVTDSEIVDYD+
Sbjct: 99 TRNETMYFIADSEKEKEDWINSIGRSIVQNSRSVTDSEIVDYDN 142
>dbj|BAB63699.1| P0683F02.2 [Oryza sativa (japonica cultivar-group)]
gi|21743327|dbj|BAC03321.1| OJ1402_H07.10 [Oryza sativa
(japonica cultivar-group)]
Length = 158
Score = 187 bits (475), Expect = 1e-46
Identities = 86/106 (81%), Positives = 99/106 (93%)
Frame = -1
Query: 687 EYIKTWRRRWFVLKQGKLFWFKDSAVTRVSKPRGVVPVASCLTVKGAEDVLHKPYAFELS 508
EYIKTWRRRWFVLKQG+LFWFKDS VTR S PRGV+PVA+CLTVKGAED L++ +AFELS
Sbjct: 42 EYIKTWRRRWFVLKQGRLFWFKDSGVTRASVPRGVIPVATCLTVKGAEDTLNRQFAFELS 101
Query: 507 TRSDTMYFIADSDKEKEDWINSIGRSIVQHSRSVTDSEIVDYDSAQ 370
T ++TMYFIADS+KEKE+WINSIGRSIVQHSRSVTD+E+VDYDS +
Sbjct: 102 TPAETMYFIADSEKEKEEWINSIGRSIVQHSRSVTDAEVVDYDSGR 147
>ref|NP_565687.1| expressed protein; protein id: At2g29700.1, supported by cDNA:
12086., supported by cDNA: gi_15215631, supported by
cDNA: gi_20334885, supported by cDNA: gi_5926715
[Arabidopsis thaliana] gi|25408043|pir||E84699
hypothetical protein At2g29700 [imported] - Arabidopsis
thaliana gi|3582339|gb|AAC35236.1| expressed protein
[Arabidopsis thaliana] gi|15215632|gb|AAK91361.1|
At2g29700/T27A16.20 [Arabidopsis thaliana]
gi|20334886|gb|AAM16199.1| At2g29700/T27A16.20
[Arabidopsis thaliana] gi|21537127|gb|AAM61468.1| AtPH1
[Arabidopsis thaliana]
Length = 145
Score = 167 bits (422), Expect = 2e-40
Identities = 79/105 (75%), Positives = 92/105 (87%), Gaps = 2/105 (1%)
Frame = -1
Query: 687 EYIKTWRRRWFVLKQGKLFWFKDSAVT--RVSKPRGVVPVASCLTVKGAEDVLHKPYAFE 514
+YIKTWRRRWFVLK+GKL WFKD A R S PRGV+ V CLTVKGAEDV++KP+AFE
Sbjct: 38 DYIKTWRRRWFVLKRGKLLWFKDQAAAGIRGSTPRGVISVGDCLTVKGAEDVVNKPFAFE 97
Query: 513 LSTRSDTMYFIADSDKEKEDWINSIGRSIVQHSRSVTDSEIVDYD 379
LS+ S TM+FIAD++KEKE+WINSIGRSIVQHSRSVTDSE++DYD
Sbjct: 98 LSSGSYTMFFIADNEKEKEEWINSIGRSIVQHSRSVTDSEVLDYD 142
>pir||T52471 hypothetical protein AtPH1 [imported] - Arabidopsis thaliana
gi|5926716|dbj|BAA84651.1| AtPH1 [Arabidopsis thaliana]
Length = 145
Score = 167 bits (422), Expect = 2e-40
Identities = 79/105 (75%), Positives = 92/105 (87%), Gaps = 2/105 (1%)
Frame = -1
Query: 687 EYIKTWRRRWFVLKQGKLFWFKDSAVT--RVSKPRGVVPVASCLTVKGAEDVLHKPYAFE 514
+YIKTWRRRWFVLK+GKL WFKD A R S PRGV+ V CLTVKGAEDV++KP+AFE
Sbjct: 38 DYIKTWRRRWFVLKRGKLLWFKDQAAAGIRGSTPRGVISVGDCLTVKGAEDVVNKPFAFE 97
Query: 513 LSTRSDTMYFIADSDKEKEDWINSIGRSIVQHSRSVTDSEIVDYD 379
LS+ S TM+FIAD++KEKE+WINSIGRSIVQHSRSVTDSE++DYD
Sbjct: 98 LSSGSYTMFFIADNEKEKEEWINSIGRSIVQHSRSVTDSEVLDYD 142
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 573,518,901
Number of Sequences: 1393205
Number of extensions: 12730213
Number of successful extensions: 115684
Number of sequences better than 10.0: 3044
Number of HSP's better than 10.0 without gapping: 68881
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 99540
length of database: 448,689,247
effective HSP length: 119
effective length of database: 282,897,852
effective search space used: 30835865868
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
