>KMC000825A_C01 KMC000825A_c01
caatttTAAATGTATTTTTTATTCAAATATAAATCTGATACATTTTTCCTTATCATATCC
TGTTCTTATCATGTGCACCTCAAACACAGGATATGATAAGAGTCTATCCTGCTCTTATCC
TATCCTGTTGATATCCTGTTCACATATCATATCCTATCCTGACCACCAAACGGGCCCTTA
GATTAACAAGGAGAAAATTATGCCAAGAACAAATTTAAGGTAACTGAACAACTAAAAAAT
CGACCTTAGAAAATTAAAACTAATGAATCCATCAAAGGACATGATAACTCAAGAAACATA
GTAAAGTGCGGTTTTCTTGAAGAAAAAAAAAGAACCATACATACATGGTGAGCAGTGAAC
CACTGCTTAGAAATCTCGGAAACTCATTTTTGGGTCCACCATTGATCCACCCCTGCGTCC
TCTGTCCCTATACCCGCCTTTTCTTCCTCCTCTTCCTCTTCCCCGTGAACTCTGCCTGAA
GCCTCTCCCATGTTTCATCTCCACAAGGGAATGCAGTAACTCATCA

BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KMC000825A_C01 KMC000825A_c01
         (526 letters)

Database: nr 
           1,393,205 sequences; 448,689,247 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|NP_180760.1| putative DNA topoisomerase III beta; protein id...    63  2e-09
dbj|BAA83016.2| KIAA1064 protein [Homo sapiens]                        37  0.18
ref|XP_218334.1| similar to KIAA1064 protein [Homo sapiens] [Rat...    37  0.18
ref|XP_028253.2| similar to KIAA1064 protein [Homo sapiens]            37  0.18
ref|NP_704413.1| hypothetical protein, conserved [Plasmodium fal...    36  0.24

>ref|NP_180760.1| putative DNA topoisomerase III beta; protein id: At2g32000.1
           [Arabidopsis thaliana] gi|25408202|pir||G84727 probable
           DNA topoisomerase III beta [imported] - Arabidopsis
           thaliana gi|4263718|gb|AAD15404.1| putative DNA
           topoisomerase III beta [Arabidopsis thaliana]
          Length = 836

 Score = 63.2 bits (152), Expect = 2e-09
 Identities = 35/53 (66%), Positives = 38/53 (71%), Gaps = 1/53 (1%)
 Frame = -2

Query: 525 DELLHSLVEMKHGRGF-RQSSRGRGRGGRKGGYRDRGRRGGSMVDPKMSFRDF 370
           DELL SLVE+KHGR F R+  RGRGRG  +G     GRRG   VDPKMSFRDF
Sbjct: 787 DELLLSLVEVKHGRSFVRRGGRGRGRGRGRGR---GGRRGSKSVDPKMSFRDF 836

>dbj|BAA83016.2| KIAA1064 protein [Homo sapiens]
          Length = 1315

 Score = 36.6 bits (83), Expect = 0.18
 Identities = 18/31 (58%), Positives = 20/31 (64%)
 Frame = -2

Query: 495 KHGRGFRQSSRGRGRGGRKGGYRDRGRRGGS 403
           ++ R    SSRGRG  GR  GYR RG RGGS
Sbjct: 238 QYRRAKEGSSRGRGSRGRGRGYRGRGSRGGS 268

>ref|XP_218334.1| similar to KIAA1064 protein [Homo sapiens] [Rattus norvegicus]
          Length = 1199

 Score = 36.6 bits (83), Expect = 0.18
 Identities = 18/31 (58%), Positives = 20/31 (64%)
 Frame = -2

Query: 495 KHGRGFRQSSRGRGRGGRKGGYRDRGRRGGS 403
           ++ R    SSRGRG  GR  GYR RG RGGS
Sbjct: 226 QYRRAKEGSSRGRGSRGRGRGYRGRGSRGGS 256

>ref|XP_028253.2| similar to KIAA1064 protein [Homo sapiens]
          Length = 1303

 Score = 36.6 bits (83), Expect = 0.18
 Identities = 18/31 (58%), Positives = 20/31 (64%)
 Frame = -2

Query: 495 KHGRGFRQSSRGRGRGGRKGGYRDRGRRGGS 403
           ++ R    SSRGRG  GR  GYR RG RGGS
Sbjct: 226 QYRRAKEGSSRGRGSRGRGRGYRGRGSRGGS 256

>ref|NP_704413.1| hypothetical protein, conserved [Plasmodium falciparum 3D7]
           gi|23499152|emb|CAD51232.1| hypothetical protein,
           conserved [Plasmodium falciparum 3D7]
          Length = 248

 Score = 36.2 bits (82), Expect = 0.24
 Identities = 19/29 (65%), Positives = 19/29 (65%)
 Frame = -2

Query: 489 GRGFRQSSRGRGRGGRKGGYRDRGRRGGS 403
           G GFR   RG  RGGR GGYR  G RGGS
Sbjct: 203 GGGFRGGFRGGFRGGRDGGYRG-GNRGGS 230

  Database: nr
    Posted date:  Apr 1, 2003  2:05 AM
  Number of letters in database: 448,689,247
  Number of sequences in database:  1,393,205
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 455,891,810
Number of Sequences: 1393205
Number of extensions: 10093636
Number of successful extensions: 43133
Number of sequences better than 10.0: 91
Number of HSP's better than 10.0 without gapping: 34394
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 41717
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 17019769648
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

EST assemble image

clone accession position 1 MRL016f10_f BP084545 1 515 2 MPDL043e04_f AV778676 6 497 3 MWM063d03_f AV765705 8 405 4 GENLf059a04 BP065481 15 464 5 GENLf038f12 BP064357 22 531

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