Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000824A_C05 KMC000824A_c05
(624 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||T52134 Zwille protein [imported] - Arabidopsis thaliana gi|... 134 3e-44
ref|NP_199194.1| PINHEAD (gb|AAD40098.1); translation initiation... 134 3e-44
dbj|BAB96813.1| ZLL/PNH homologous protein [Oryza sativa (japoni... 129 5e-43
ref|NP_175274.1| leaf development protein Argonaute; protein id:... 153 2e-36
gb|AAF79718.1|AC020889_26 T1N15.2 [Arabidopsis thaliana] 147 8e-35
>pir||T52134 Zwille protein [imported] - Arabidopsis thaliana
gi|2959781|emb|CAA11429.1| Zwille protein [Arabidopsis
thaliana]
Length = 988
Score = 134 bits (336), Expect(2) = 3e-44
Identities = 58/63 (92%), Positives = 63/63 (99%)
Frame = -2
Query: 623 ILPGTVVDSKICHPTEFDFYLCSHAGIQGTSRPAHYHVLWDENNFTADGLQSLTHHLCYT 444
ILPGTVVD+KICHPTEFDFYLCSHAGIQGTSRPAHYHVLWDENNFTADG+QSLT++LCYT
Sbjct: 858 ILPGTVVDTKICHPTEFDFYLCSHAGIQGTSRPAHYHVLWDENNFTADGIQSLTNNLCYT 917
Query: 443 YAK 435
YA+
Sbjct: 918 YAR 920
Score = 67.0 bits (162), Expect(2) = 3e-44
Identities = 41/72 (56%), Positives = 46/72 (62%), Gaps = 1/72 (1%)
Frame = -3
Query: 436 RCTRSVSIVPPAYYAHLAAFRARFYMEPE-TSDSGSMTQCSLLVAEWVDELLGHLVPALQ 260
RCTRSVSIVPPAYYAHLAAFRARFY+EPE D+GS + + D + L
Sbjct: 920 RCTRSVSIVPPAYYAHLAAFRARFYLEPEIMQDNGSPGKKNTKTTTVGDVGVKPL----- 974
Query: 259 *GHYPALKENVK 224
PALKENVK
Sbjct: 975 ----PALKENVK 982
>ref|NP_199194.1| PINHEAD (gb|AAD40098.1); translation initiation factor; protein id:
At5g43810.1 [Arabidopsis thaliana]
gi|12643935|sp|Q9XGW1|PINH_ARATH PINHEAD protein (ZWILLE
protein) gi|5107374|gb|AAD40098.1|AF154272_1 PINHEAD
[Arabidopsis thaliana] gi|10177951|dbj|BAB11310.1|
PINHEAD [Arabidopsis thaliana]
Length = 988
Score = 134 bits (336), Expect(2) = 3e-44
Identities = 58/63 (92%), Positives = 63/63 (99%)
Frame = -2
Query: 623 ILPGTVVDSKICHPTEFDFYLCSHAGIQGTSRPAHYHVLWDENNFTADGLQSLTHHLCYT 444
ILPGTVVD+KICHPTEFDFYLCSHAGIQGTSRPAHYHVLWDENNFTADG+QSLT++LCYT
Sbjct: 858 ILPGTVVDTKICHPTEFDFYLCSHAGIQGTSRPAHYHVLWDENNFTADGIQSLTNNLCYT 917
Query: 443 YAK 435
YA+
Sbjct: 918 YAR 920
Score = 67.0 bits (162), Expect(2) = 3e-44
Identities = 41/72 (56%), Positives = 46/72 (62%), Gaps = 1/72 (1%)
Frame = -3
Query: 436 RCTRSVSIVPPAYYAHLAAFRARFYMEPE-TSDSGSMTQCSLLVAEWVDELLGHLVPALQ 260
RCTRSVSIVPPAYYAHLAAFRARFY+EPE D+GS + + D + L
Sbjct: 920 RCTRSVSIVPPAYYAHLAAFRARFYLEPEIMQDNGSPGKKNTKTTTVGDVGVKPL----- 974
Query: 259 *GHYPALKENVK 224
PALKENVK
Sbjct: 975 ----PALKENVK 982
>dbj|BAB96813.1| ZLL/PNH homologous protein [Oryza sativa (japonica cultivar-group)]
Length = 978
Score = 129 bits (324), Expect(2) = 5e-43
Identities = 56/63 (88%), Positives = 62/63 (97%)
Frame = -2
Query: 623 ILPGTVVDSKICHPTEFDFYLCSHAGIQGTSRPAHYHVLWDENNFTADGLQSLTHHLCYT 444
ILPGTVVDSKICHP+EFDFYLCSHAGIQGTSRPAHYHVLWDENNFTAD +Q+LT++LCYT
Sbjct: 852 ILPGTVVDSKICHPSEFDFYLCSHAGIQGTSRPAHYHVLWDENNFTADEMQTLTNNLCYT 911
Query: 443 YAK 435
YA+
Sbjct: 912 YAR 914
Score = 67.4 bits (163), Expect(2) = 5e-43
Identities = 30/40 (75%), Positives = 36/40 (90%)
Frame = -3
Query: 436 RCTRSVSIVPPAYYAHLAAFRARFYMEPETSDSGSMTQCS 317
RCTRSVS+VPPAYYAHLAAFRARFYMEPE S++ + ++ S
Sbjct: 914 RCTRSVSVVPPAYYAHLAAFRARFYMEPEMSENQTTSKSS 953
>ref|NP_175274.1| leaf development protein Argonaute; protein id: At1g48410.1,
supported by cDNA: gi_2149639 [Arabidopsis thaliana]
gi|11386626|sp|O04379|AGO1_ARATH Argonaute protein
gi|2149640|gb|AAC18440.1| Argonaute protein [Arabidopsis
thaliana] gi|5733867|gb|AAD49755.1|AC007932_3 Identical
to Argonaute protein from Arabidopsis thaliana gb|U91995.
EST gb|AA720232 comes from this gene
gi|24030354|gb|AAN41341.1| putative leaf development
protein Argonaute [Arabidopsis thaliana]
Length = 1048
Score = 153 bits (386), Expect = 2e-36
Identities = 80/138 (57%), Positives = 91/138 (64%), Gaps = 12/138 (8%)
Frame = -2
Query: 623 ILPGTVVDSKICHPTEFDFYLCSHAGIQGTSRPAHYHVLWDENNFTADGLQSLTHHLCYT 444
ILPGTVVDSKICHPTEFDFYLCSHAGIQGTSRPAHYHVLWDENNFTADGLQSLT++LCYT
Sbjct: 909 ILPGTVVDSKICHPTEFDFYLCSHAGIQGTSRPAHYHVLWDENNFTADGLQSLTNNLCYT 968
Query: 443 YAKVHT------------ICIYCASSILCPSRSLPSKVLYGA*NF*QWLHDPVLAAGRGM 300
YA+ + + A + P S + G+ +A G GM
Sbjct: 969 YARCTRSVSIVPPAYYAHLAAFRARFYMEPETSDSGSMASGS-----------MARGGGM 1017
Query: 299 GGRTTRAPGASAAVRPLP 246
GR+TR P +AAVRPLP
Sbjct: 1018 AGRSTRGPNVNAAVRPLP 1035
Score = 79.3 bits (194), Expect = 4e-14
Identities = 48/73 (65%), Positives = 50/73 (67%), Gaps = 2/73 (2%)
Frame = -3
Query: 436 RCTRSVSIVPPAYYAHLAAFRARFYMEPETSDSGSMTQCSLLVAEWV--DELLGHLVPAL 263
RCTRSVSIVPPAYYAHLAAFRARFYMEPETSDSGSM S+ + G V A
Sbjct: 971 RCTRSVSIVPPAYYAHLAAFRARFYMEPETSDSGSMASGSMARGGGMAGRSTRGPNVNAA 1030
Query: 262 Q*GHYPALKENVK 224
PALKENVK
Sbjct: 1031 V-RPLPALKENVK 1042
>gb|AAF79718.1|AC020889_26 T1N15.2 [Arabidopsis thaliana]
Length = 1123
Score = 147 bits (372), Expect = 8e-35
Identities = 80/141 (56%), Positives = 91/141 (63%), Gaps = 15/141 (10%)
Frame = -2
Query: 623 ILPG---TVVDSKICHPTEFDFYLCSHAGIQGTSRPAHYHVLWDENNFTADGLQSLTHHL 453
ILPG TVVDSKICHPTEFDFYLCSHAGIQGTSRPAHYHVLWDENNFTADGLQSLT++L
Sbjct: 981 ILPGETSTVVDSKICHPTEFDFYLCSHAGIQGTSRPAHYHVLWDENNFTADGLQSLTNNL 1040
Query: 452 CYTYAKVHT------------ICIYCASSILCPSRSLPSKVLYGA*NF*QWLHDPVLAAG 309
CYTYA+ + + A + P S + G+ +A G
Sbjct: 1041 CYTYARCTRSVSIVPPAYYAHLAAFRARFYMEPETSDSGSMASGS-----------MARG 1089
Query: 308 RGMGGRTTRAPGASAAVRPLP 246
GM GR+TR P +AAVRPLP
Sbjct: 1090 GGMAGRSTRGPNVNAAVRPLP 1110
Score = 79.3 bits (194), Expect = 4e-14
Identities = 48/73 (65%), Positives = 50/73 (67%), Gaps = 2/73 (2%)
Frame = -3
Query: 436 RCTRSVSIVPPAYYAHLAAFRARFYMEPETSDSGSMTQCSLLVAEWV--DELLGHLVPAL 263
RCTRSVSIVPPAYYAHLAAFRARFYMEPETSDSGSM S+ + G V A
Sbjct: 1046 RCTRSVSIVPPAYYAHLAAFRARFYMEPETSDSGSMASGSMARGGGMAGRSTRGPNVNAA 1105
Query: 262 Q*GHYPALKENVK 224
PALKENVK
Sbjct: 1106 V-RPLPALKENVK 1117
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 599,676,570
Number of Sequences: 1393205
Number of extensions: 14173910
Number of successful extensions: 41146
Number of sequences better than 10.0: 160
Number of HSP's better than 10.0 without gapping: 38916
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 41100
length of database: 448,689,247
effective HSP length: 118
effective length of database: 284,291,057
effective search space used: 25301904073
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
