Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000823A_C03 KMC000823A_c03
(780 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||T06493 1,4-alpha-glucan branching enzyme (EC 2.4.1.18) I - ... 133 3e-30
dbj|BAA82348.1| branching enzyme 1 [Phaseolus vulgaris] 127 2e-28
pir||T07743 probable 1,4-alpha-glucan branching enzyme (EC 2.4.1... 120 2e-26
emb|CAB40746.1| starch branching enzyme II [Solanum tuberosum] 120 2e-26
emb|CAB40747.1| starch branching enzyme II [Solanum tuberosum] 119 4e-26
>pir||T06493 1,4-alpha-glucan branching enzyme (EC 2.4.1.18) I - garden pea
gi|1345570|emb|CAA56319.1| starch branching enzyme I
[Pisum sativum]
Length = 922
Score = 133 bits (334), Expect = 3e-30
Identities = 59/71 (83%), Positives = 64/71 (90%)
Frame = -2
Query: 779 DYRIGCLHPGXYKIALDSDDPSFGGFNRLNHAAEYFTTDGWYDDRPRSFLVYAPSRTAVV 600
DY++GCL PG YKI LDSDD FGGFNRLNH AEYFT++GWYDDRPRSFLVYAPSRTAVV
Sbjct: 782 DYKVGCLKPGKYKIVLDSDDTLFGGFNRLNHTAEYFTSEGWYDDRPRSFLVYAPSRTAVV 841
Query: 599 YALADGIELEP 567
YALADG+E EP
Sbjct: 842 YALADGVESEP 852
>dbj|BAA82348.1| branching enzyme 1 [Phaseolus vulgaris]
Length = 870
Score = 127 bits (318), Expect = 2e-28
Identities = 61/79 (77%), Positives = 67/79 (84%), Gaps = 4/79 (5%)
Frame = -2
Query: 779 DYRIGCLHPGXYKIALDSDDPSFGGFNRLNHAAEYFTTDGWYDDRPRSFLVYAPSRTAVV 600
DYR+GC PG YKI LDSDD FGGFNRLNH+AEYFT++GWYDDRPRSFL+YAPSRTAVV
Sbjct: 781 DYRVGCATPGKYKIVLDSDDALFGGFNRLNHSAEYFTSEGWYDDRPRSFLIYAPSRTAVV 840
Query: 599 YALADGIELEP----EVEP 555
YALAD +LEP EVEP
Sbjct: 841 YALAD--DLEPAFLDEVEP 857
>pir||T07743 probable 1,4-alpha-glucan branching enzyme (EC 2.4.1.18) isoform II
- potato (fragment) gi|2764396|emb|CAA03846.1| starch
branching enzyme II, SBE-II [Solanum tuberosum]
Length = 830
Score = 120 bits (301), Expect = 2e-26
Identities = 55/72 (76%), Positives = 60/72 (82%)
Frame = -2
Query: 779 DYRIGCLHPGXYKIALDSDDPSFGGFNRLNHAAEYFTTDGWYDDRPRSFLVYAPSRTAVV 600
DYRIGCL PG YK+ALDSDDP FGGF R++H AEYFT +GWYDDRPRS +VYAPSRTAVV
Sbjct: 746 DYRIGCLKPGKYKVALDSDDPLFGGFGRIDHNAEYFTFEGWYDDRPRSIMVYAPSRTAVV 805
Query: 599 YALADGIELEPE 564
YAL D E E E
Sbjct: 806 YALVDKEEEEEE 817
>emb|CAB40746.1| starch branching enzyme II [Solanum tuberosum]
Length = 878
Score = 120 bits (301), Expect = 2e-26
Identities = 55/72 (76%), Positives = 60/72 (82%)
Frame = -2
Query: 779 DYRIGCLHPGXYKIALDSDDPSFGGFNRLNHAAEYFTTDGWYDDRPRSFLVYAPSRTAVV 600
DYRIGCL PG YK+ALDSDDP FGGF R++H AEYFT +GWYDDRPRS +VYAPSRTAVV
Sbjct: 794 DYRIGCLKPGKYKVALDSDDPLFGGFGRIDHNAEYFTFEGWYDDRPRSIMVYAPSRTAVV 853
Query: 599 YALADGIELEPE 564
YAL D E E E
Sbjct: 854 YALVDKEEEEEE 865
>emb|CAB40747.1| starch branching enzyme II [Solanum tuberosum]
Length = 836
Score = 119 bits (299), Expect = 4e-26
Identities = 55/74 (74%), Positives = 60/74 (80%)
Frame = -2
Query: 779 DYRIGCLHPGXYKIALDSDDPSFGGFNRLNHAAEYFTTDGWYDDRPRSFLVYAPSRTAVV 600
DYRIGCL PG YK+ALDSDDP FGGF R++H AEYFT +GWYDDRPRS +VYAP RTAVV
Sbjct: 749 DYRIGCLKPGKYKVALDSDDPLFGGFGRIDHNAEYFTFEGWYDDRPRSIMVYAPCRTAVV 808
Query: 599 YALADGIELEPEVE 558
YAL D E E E E
Sbjct: 809 YALVDKEEEEEEEE 822
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 653,897,624
Number of Sequences: 1393205
Number of extensions: 13399350
Number of successful extensions: 27882
Number of sequences better than 10.0: 85
Number of HSP's better than 10.0 without gapping: 26639
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 27841
length of database: 448,689,247
effective HSP length: 121
effective length of database: 280,111,442
effective search space used: 38655378996
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
