Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000821A_C01 KMC000821A_c01
(629 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAK96863.1| putative protein [Arabidopsis thaliana] 144 7e-34
ref|NP_194620.1| putative protein; protein id: At4g28910.1, supp... 144 7e-34
gb|AAF20221.1|AC012395_8 putative RNA-binding protein [Arabidops... 68 9e-11
ref|NP_187381.2| NTF2-containing RNA-binding protein, putative; ... 68 9e-11
dbj|BAB01982.1| contains similarity to unknown protein~gb|AAF270... 67 1e-10
>gb|AAK96863.1| putative protein [Arabidopsis thaliana]
Length = 425
Score = 144 bits (364), Expect = 7e-34
Identities = 71/125 (56%), Positives = 92/125 (72%), Gaps = 6/125 (4%)
Frame = -3
Query: 615 VAPTSGXKDVSDQPKGEGS------AVDFSNIKXGLAADVKFGGGGSYPNLPWVSTSGSG 454
VA +D S++P G+ S + DFS IK G+AADVKFGG G+ PNLPWVST+GSG
Sbjct: 308 VAEEGSSEDASERPTGDNSNLNTAFSFDFSAIKPGMAADVKFGGSGARPNLPWVSTTGSG 367
Query: 453 PNGRTISGVTYRYSSNQIRIVCACHGTHLTPEEFVRHASDDKANQEGNAVLGSVPNGNPA 274
P+GRTISGVTYRY++NQI+IVCACHG+H++PEEFVRHAS++ + E + G A
Sbjct: 368 PHGRTISGVTYRYNANQIKIVCACHGSHMSPEEFVRHASEEYVSPESSM-------GMTA 420
Query: 273 ASSHS 259
AS+H+
Sbjct: 421 ASAHT 425
>ref|NP_194620.1| putative protein; protein id: At4g28910.1, supported by cDNA:
12759., supported by cDNA: gi_15451183, supported by
cDNA: gi_17529129, supported by cDNA: gi_20466050
[Arabidopsis thaliana] gi|7486151|pir||T08946
hypothetical protein F25O24.30 - Arabidopsis thaliana
gi|4972080|emb|CAB43905.1| putative protein [Arabidopsis
thaliana] gi|7269746|emb|CAB81479.1| putative protein
[Arabidopsis thaliana] gi|17529130|gb|AAL38791.1|
unknown protein [Arabidopsis thaliana]
gi|20466051|gb|AAM20360.1| unknown protein [Arabidopsis
thaliana] gi|21537300|gb|AAM61641.1| unknown
[Arabidopsis thaliana]
Length = 425
Score = 144 bits (364), Expect = 7e-34
Identities = 71/125 (56%), Positives = 92/125 (72%), Gaps = 6/125 (4%)
Frame = -3
Query: 615 VAPTSGXKDVSDQPKGEGS------AVDFSNIKXGLAADVKFGGGGSYPNLPWVSTSGSG 454
VA +D S++P G+ S + DFS IK G+AADVKFGG G+ PNLPWVST+GSG
Sbjct: 308 VAEEGSSEDASERPTGDNSNLNTAFSFDFSAIKPGMAADVKFGGSGARPNLPWVSTTGSG 367
Query: 453 PNGRTISGVTYRYSSNQIRIVCACHGTHLTPEEFVRHASDDKANQEGNAVLGSVPNGNPA 274
P+GRTISGVTYRY++NQI+IVCACHG+H++PEEFVRHAS++ + E + G A
Sbjct: 368 PHGRTISGVTYRYNANQIKIVCACHGSHMSPEEFVRHASEEYVSPESSM-------GMTA 420
Query: 273 ASSHS 259
AS+H+
Sbjct: 421 ASAHT 425
>gb|AAF20221.1|AC012395_8 putative RNA-binding protein [Arabidopsis thaliana]
Length = 946
Score = 68.2 bits (165), Expect = 9e-11
Identities = 37/98 (37%), Positives = 54/98 (54%), Gaps = 2/98 (2%)
Frame = -3
Query: 627 T*KEVAPTSGXKDVSDQPKGEGSAVDFSNIKXGLAADVKFGGGGSYP--NLPWVSTSGSG 454
T + V T G KD Q + S+V + K G G P +P V+++G+G
Sbjct: 171 TEQTVHNTDGSKDAETQ-EWSNSSVTKESGKPPKPHTNSNGNGSLLPFAQMPCVTSTGNG 229
Query: 453 PNGRTISGVTYRYSSNQIRIVCACHGTHLTPEEFVRHA 340
P G+T++G YRYS ++I I+C CHGT +P EF+ HA
Sbjct: 230 PEGKTVNGFLYRYSKSEISIICVCHGTSFSPAEFIVHA 267
>ref|NP_187381.2| NTF2-containing RNA-binding protein, putative; protein id:
At3g07250.1 [Arabidopsis thaliana]
Length = 1294
Score = 68.2 bits (165), Expect = 9e-11
Identities = 37/98 (37%), Positives = 54/98 (54%), Gaps = 2/98 (2%)
Frame = -3
Query: 627 T*KEVAPTSGXKDVSDQPKGEGSAVDFSNIKXGLAADVKFGGGGSYP--NLPWVSTSGSG 454
T + V T G KD Q + S+V + K G G P +P V+++G+G
Sbjct: 171 TEQTVHNTDGSKDAETQ-EWSNSSVTKESGKPPKPHTNSNGNGSLLPFAQMPCVTSTGNG 229
Query: 453 PNGRTISGVTYRYSSNQIRIVCACHGTHLTPEEFVRHA 340
P G+T++G YRYS ++I I+C CHGT +P EF+ HA
Sbjct: 230 PEGKTVNGFLYRYSKSEISIICVCHGTSFSPAEFIVHA 267
>dbj|BAB01982.1| contains similarity to unknown
protein~gb|AAF27062.1~gene_id:MWE13.5 [Arabidopsis
thaliana]
Length = 261
Score = 67.4 bits (163), Expect = 1e-10
Identities = 28/50 (56%), Positives = 39/50 (78%), Gaps = 1/50 (2%)
Frame = -3
Query: 486 NLPWVSTSGSGPNGRTISGVTYRY-SSNQIRIVCACHGTHLTPEEFVRHA 340
++P+VST+G GPNG+ I+G YRY ++RIVC CHG+ L+P EFV+HA
Sbjct: 162 DMPFVSTTGDGPNGKKINGFLYRYRKGEEVRIVCVCHGSFLSPAEFVKHA 211
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 570,904,578
Number of Sequences: 1393205
Number of extensions: 13319934
Number of successful extensions: 33098
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 31482
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 33038
length of database: 448,689,247
effective HSP length: 118
effective length of database: 284,291,057
effective search space used: 25870486187
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
