Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000820A_C01 KMC000820A_c01
(651 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||D96798 hypothetical protein F22K20.5 [imported] - Arabidops... 136 2e-31
ref|NP_565144.1| expressed protein; protein id: At1g76950.1, sup... 136 2e-31
gb|AAL58903.1|AF462811_1 At1g76950/F22K20_5 [Arabidopsis thalian... 136 2e-31
gb|AAK84081.1|AF326781_2 putative chromosome condensation factor... 133 2e-30
ref|NP_199029.1| TMV resistance protein-like; protein id: At5g42... 127 1e-28
>pir||D96798 hypothetical protein F22K20.5 [imported] - Arabidopsis thaliana
gi|2829910|gb|AAC00618.1| Unknown protein, contains
regulator of chromosome condensation motifs [Arabidopsis
thaliana]
Length = 1108
Score = 136 bits (343), Expect = 2e-31
Identities = 63/75 (84%), Positives = 68/75 (90%)
Frame = -1
Query: 633 SNHVEAEWIEQYEPGVYITLVALRDGTRDLKRVRFSRRRFGEHQAETWWSENREKVYEKY 454
+N VEAEWIEQYEPGVYITLVAL DGTRDL+RVRFSRRRFGEHQAETWWSENREKVYEKY
Sbjct: 1023 TNQVEAEWIEQYEPGVYITLVALHDGTRDLRRVRFSRRRFGEHQAETWWSENREKVYEKY 1082
Query: 453 NVRSTDKSTGQASRR 409
NVR ++KST + R
Sbjct: 1083 NVRVSEKSTASQTHR 1097
>ref|NP_565144.1| expressed protein; protein id: At1g76950.1, supported by cDNA:
gi_15811366, supported by cDNA: gi_18087540 [Arabidopsis
thaliana] gi|15811367|gb|AAL08940.1| zinc finger protein
[Arabidopsis thaliana]
Length = 1103
Score = 136 bits (343), Expect = 2e-31
Identities = 63/75 (84%), Positives = 68/75 (90%)
Frame = -1
Query: 633 SNHVEAEWIEQYEPGVYITLVALRDGTRDLKRVRFSRRRFGEHQAETWWSENREKVYEKY 454
+N VEAEWIEQYEPGVYITLVAL DGTRDL+RVRFSRRRFGEHQAETWWSENREKVYEKY
Sbjct: 1018 TNQVEAEWIEQYEPGVYITLVALHDGTRDLRRVRFSRRRFGEHQAETWWSENREKVYEKY 1077
Query: 453 NVRSTDKSTGQASRR 409
NVR ++KST + R
Sbjct: 1078 NVRVSEKSTASQTHR 1092
>gb|AAL58903.1|AF462811_1 At1g76950/F22K20_5 [Arabidopsis thaliana] gi|27363446|gb|AAO11642.1|
At1g76950/F22K20_5 [Arabidopsis thaliana]
Length = 1103
Score = 136 bits (343), Expect = 2e-31
Identities = 63/75 (84%), Positives = 68/75 (90%)
Frame = -1
Query: 633 SNHVEAEWIEQYEPGVYITLVALRDGTRDLKRVRFSRRRFGEHQAETWWSENREKVYEKY 454
+N VEAEWIEQYEPGVYITLVAL DGTRDL+RVRFSRRRFGEHQAETWWSENREKVYEKY
Sbjct: 1018 TNQVEAEWIEQYEPGVYITLVALHDGTRDLRRVRFSRRRFGEHQAETWWSENREKVYEKY 1077
Query: 453 NVRSTDKSTGQASRR 409
NVR ++KST + R
Sbjct: 1078 NVRVSEKSTASQTHR 1092
>gb|AAK84081.1|AF326781_2 putative chromosome condensation factor [Triticum monococcum]
Length = 907
Score = 133 bits (335), Expect = 2e-30
Identities = 61/76 (80%), Positives = 68/76 (89%)
Frame = -1
Query: 636 ASNHVEAEWIEQYEPGVYITLVALRDGTRDLKRVRFSRRRFGEHQAETWWSENREKVYEK 457
+SN V+AEWIEQYEPGVYITL LRDGTRDLKRVRFSRRRFGEHQAE WW+ENREKVYEK
Sbjct: 829 SSNQVQAEWIEQYEPGVYITLTTLRDGTRDLKRVRFSRRRFGEHQAENWWNENREKVYEK 888
Query: 456 YNVRSTDKSTGQASRR 409
YNVRS+++ + AS R
Sbjct: 889 YNVRSSERVSSAASTR 904
>ref|NP_199029.1| TMV resistance protein-like; protein id: At5g42140.1 [Arabidopsis
thaliana] gi|9757959|dbj|BAB08447.1| TMV resistance
protein-like [Arabidopsis thaliana]
Length = 1073
Score = 127 bits (320), Expect = 1e-28
Identities = 59/75 (78%), Positives = 67/75 (88%)
Frame = -1
Query: 651 AVSPAASNHVEAEWIEQYEPGVYITLVALRDGTRDLKRVRFSRRRFGEHQAETWWSENRE 472
A S + ++ VEAEWIEQYEPGVYITL+AL DGTRDLKRVRFSRRRF E QAETWWSENRE
Sbjct: 988 AASASNASQVEAEWIEQYEPGVYITLLALGDGTRDLKRVRFSRRRFREQQAETWWSENRE 1047
Query: 471 KVYEKYNVRSTDKST 427
+VYEKYN+R TD+S+
Sbjct: 1048 RVYEKYNIRGTDRSS 1062
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 547,612,087
Number of Sequences: 1393205
Number of extensions: 11966045
Number of successful extensions: 31675
Number of sequences better than 10.0: 50
Number of HSP's better than 10.0 without gapping: 30707
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 31646
length of database: 448,689,247
effective HSP length: 118
effective length of database: 284,291,057
effective search space used: 27860523586
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
