Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000819A_C01 KMC000819A_c01
(768 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CAC42781.1| peroxin 6 [Helianthus annuus] 239 3e-62
ref|NP_171799.2| putative peroxisome assembly factor-2; protein ... 219 4e-56
pir||F86160 F10O3.18 protein - Arabidopsis thaliana gi|4587578|g... 219 4e-56
emb|CAB55389.1| zwh0005.1 [Oryza sativa (indica cultivar-group)] 175 7e-43
ref|NP_593468.1| putative peroxin-6, AAA family atpase [Schizosa... 136 4e-31
>emb|CAC42781.1| peroxin 6 [Helianthus annuus]
Length = 908
Score = 239 bits (610), Expect = 3e-62
Identities = 118/142 (83%), Positives = 128/142 (90%)
Frame = -1
Query: 768 FIIGASNRPDLIDPALLRPGRFDKLLYVGVNSDASYRERVLKALTRKFKLHEDVSLYSIA 589
FIIGASNRPDLID ALLRPGRFDKLLYVGV +D SYRERVLKALTRKFKLHEDVSLYSIA
Sbjct: 765 FIIGASNRPDLIDAALLRPGRFDKLLYVGVTTDPSYRERVLKALTRKFKLHEDVSLYSIA 824
Query: 588 KKCPPNFTGADTYALCADAWFHAAKRKVLSADPESSSQDNEADSVVVEHNDFVQVLVELQ 409
KKCPPNFTGAD YALCADAWFHAAKRKVL+AD + ++ ++ DSVVVE+ DFV VL EL
Sbjct: 825 KKCPPNFTGADMYALCADAWFHAAKRKVLAADADPTNMKDDVDSVVVEYEDFVTVLRELS 884
Query: 408 PSLSMAELKKYELLRDQFEGTS 343
PSLS+AELKKYE+LRDQFEG S
Sbjct: 885 PSLSLAELKKYEMLRDQFEGAS 906
>ref|NP_171799.2| putative peroxisome assembly factor-2; protein id: At1g03000.1,
supported by cDNA: gi_19310448 [Arabidopsis thaliana]
gi|19310449|gb|AAL84960.1| At1g03000/F22D16.27
[Arabidopsis thaliana] gi|24797060|gb|AAN64542.1|
At1g03000/F22D16.27 [Arabidopsis thaliana]
Length = 941
Score = 219 bits (557), Expect = 4e-56
Identities = 108/143 (75%), Positives = 125/143 (86%), Gaps = 1/143 (0%)
Frame = -1
Query: 768 FIIGASNRPDLIDPALLRPGRFDKLLYVGVNSDASYRERVLKALTRKFKLHEDVSLYSIA 589
FIIGASNRPDLIDPALLRPGRFDKLLYVGVN+DASYRERVLKALTRKFKL EDVSLYS+A
Sbjct: 798 FIIGASNRPDLIDPALLRPGRFDKLLYVGVNADASYRERVLKALTRKFKLSEDVSLYSVA 857
Query: 588 KKCPPNFTGADTYALCADAWFHAAKRKVLSADP-ESSSQDNEADSVVVEHNDFVQVLVEL 412
KKCP FTGAD YALCADAWF AAKRKV +D + +++++ DSVVVE+ DF++ + +L
Sbjct: 858 KKCPSTFTGADMYALCADAWFQAAKRKVSKSDSGDMPTEEDDPDSVVVEYVDFIKAMDQL 917
Query: 411 QPSLSMAELKKYELLRDQFEGTS 343
PSLS+ ELKKYE+LRDQF+G S
Sbjct: 918 SPSLSITELKKYEMLRDQFQGRS 940
>pir||F86160 F10O3.18 protein - Arabidopsis thaliana
gi|4587578|gb|AAD25809.1|AC006550_17 Belongs to PF|00004
ATPases associated with various cellular activities.
[Arabidopsis thaliana]
Length = 983
Score = 219 bits (557), Expect = 4e-56
Identities = 108/143 (75%), Positives = 125/143 (86%), Gaps = 1/143 (0%)
Frame = -1
Query: 768 FIIGASNRPDLIDPALLRPGRFDKLLYVGVNSDASYRERVLKALTRKFKLHEDVSLYSIA 589
FIIGASNRPDLIDPALLRPGRFDKLLYVGVN+DASYRERVLKALTRKFKL EDVSLYS+A
Sbjct: 840 FIIGASNRPDLIDPALLRPGRFDKLLYVGVNADASYRERVLKALTRKFKLSEDVSLYSVA 899
Query: 588 KKCPPNFTGADTYALCADAWFHAAKRKVLSADP-ESSSQDNEADSVVVEHNDFVQVLVEL 412
KKCP FTGAD YALCADAWF AAKRKV +D + +++++ DSVVVE+ DF++ + +L
Sbjct: 900 KKCPSTFTGADMYALCADAWFQAAKRKVSKSDSGDMPTEEDDPDSVVVEYVDFIKAMDQL 959
Query: 411 QPSLSMAELKKYELLRDQFEGTS 343
PSLS+ ELKKYE+LRDQF+G S
Sbjct: 960 SPSLSITELKKYEMLRDQFQGRS 982
>emb|CAB55389.1| zwh0005.1 [Oryza sativa (indica cultivar-group)]
Length = 949
Score = 175 bits (443), Expect = 7e-43
Identities = 87/115 (75%), Positives = 100/115 (86%), Gaps = 2/115 (1%)
Frame = -1
Query: 768 FIIGASNRPDLIDPALLRPGRFDKLLYVGVNSDASYRERVLKALTRKFKLHEDVSLYSIA 589
FIIGA+NRPDL+D ALLRPGRFDKLLYVGVNSDASYRER+LKA TRK+KLHE+VSL SIA
Sbjct: 718 FIIGATNRPDLLDSALLRPGRFDKLLYVGVNSDASYRERILKAQTRKYKLHENVSLLSIA 777
Query: 588 KKCPPNFTGADTYALCADAWFHAAKR--KVLSADPESSSQDNEADSVVVEHNDFV 430
++CPPNFTGAD YALCADAW+HAAK K L ADP +S+ + AD V+VE NDF+
Sbjct: 778 QQCPPNFTGADIYALCADAWYHAAKNLAKTLEADPSRTSEAS-ADDVIVEINDFM 831
>ref|NP_593468.1| putative peroxin-6, AAA family atpase [Schizosaccharomyces pombe]
gi|3219842|sp|O13764|PEX6_SCHPO Probable peroxin-6
gi|7492793|pir||T37816 probable peroxin-6, AAA family
atpase - fission yeast (Schizosaccharomyces pombe)
gi|2370473|emb|CAB11501.1| putative peroxin-6, AAA family
atpase [Schizosaccharomyces pombe]
Length = 948
Score = 136 bits (342), Expect = 4e-31
Identities = 72/152 (47%), Positives = 96/152 (62%), Gaps = 14/152 (9%)
Frame = -1
Query: 768 FIIGASNRPDLIDPALLRPGRFDKLLYVGVNSDASYRERVLKALTRKFKLHEDVSLYSIA 589
F+IGA+NRPDL+DP+LLRPGRFDKL+Y+G+N + +L+ALT+ FKL E + L IA
Sbjct: 796 FVIGATNRPDLLDPSLLRPGRFDKLVYLGINKSEESKASMLRALTKTFKLDETIDLNEIA 855
Query: 588 KKCPPNFTGADTYALCADAWFHAAKRKVLSAD------------PESSSQDNEADSVV-- 451
K C PNFTGAD YALC+DA A KRK D E ++ DS+
Sbjct: 856 KNCHPNFTGADMYALCSDAVLSAIKRKTNEIDLLIQASGTDLSTEEFFKRNENQDSLELR 915
Query: 450 VEHNDFVQVLVELQPSLSMAELKKYELLRDQF 355
+ DF+ L +L+PS+S EL +YE++R QF
Sbjct: 916 ITKEDFLTSLKKLRPSISEQELHRYEMVRHQF 947
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 595,197,293
Number of Sequences: 1393205
Number of extensions: 11725853
Number of successful extensions: 28815
Number of sequences better than 10.0: 949
Number of HSP's better than 10.0 without gapping: 27218
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 28278
length of database: 448,689,247
effective HSP length: 121
effective length of database: 280,111,442
effective search space used: 37534933228
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
