Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000815A_C01 KMC000815A_c01
(585 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAN05433.1| phospholipase D delta isoform 1a [Gossypium hirsu... 115 4e-25
gb|AAN05432.1| phospholipase D delta isoform 1b [Gossypium hirsu... 113 2e-24
gb|AAN34820.1| phospholipase D delta isoform [Gossypium hirsutum] 113 2e-24
gb|AAG53975.1|AF322228_1 phospholipase D delta [Arabidopsis thal... 110 2e-23
gb|AAL11625.1|AF424632_1 AT4g35790/F4B14_60 [Arabidopsis thalian... 110 2e-23
>gb|AAN05433.1| phospholipase D delta isoform 1a [Gossypium hirsutum]
Length = 854
Score = 115 bits (288), Expect = 4e-25
Identities = 47/79 (59%), Positives = 62/79 (77%)
Frame = -1
Query: 582 FEEPERLDCVRKVNAIAEDNWRKYASEDFSLLQGHLLKYPVPVDSDGKISSLPDCENFPD 403
F+EPE L+CV+ VN +AEDNW+K+ D+S LQGHL++YP+ VD DGK+ LP ENFPD
Sbjct: 776 FKEPETLECVKTVNTVAEDNWKKFTDTDYSALQGHLMRYPLEVDIDGKVKPLPGYENFPD 835
Query: 402 AGGRILGAHSTTIPDILTT 346
GG+++G HS +PDILTT
Sbjct: 836 VGGKVIGTHSVKLPDILTT 854
>gb|AAN05432.1| phospholipase D delta isoform 1b [Gossypium hirsutum]
Length = 849
Score = 113 bits (282), Expect = 2e-24
Identities = 46/79 (58%), Positives = 65/79 (82%)
Frame = -1
Query: 582 FEEPERLDCVRKVNAIAEDNWRKYASEDFSLLQGHLLKYPVPVDSDGKISSLPDCENFPD 403
F+EPE ++CV+ VN+IAE+NW+K+ ++S LQGHLL YP+ VD DGK++ LP+ ENFPD
Sbjct: 771 FKEPESVECVKMVNSIAEENWKKFTDAEYSPLQGHLLMYPLQVDMDGKVNPLPEHENFPD 830
Query: 402 AGGRILGAHSTTIPDILTT 346
GG+++GAHS +PD+LTT
Sbjct: 831 VGGKVIGAHSIQLPDVLTT 849
>gb|AAN34820.1| phospholipase D delta isoform [Gossypium hirsutum]
Length = 849
Score = 113 bits (282), Expect = 2e-24
Identities = 46/79 (58%), Positives = 65/79 (82%)
Frame = -1
Query: 582 FEEPERLDCVRKVNAIAEDNWRKYASEDFSLLQGHLLKYPVPVDSDGKISSLPDCENFPD 403
F+EPE ++CV+ VN+IAE+NW+K+ ++S LQGHLL YP+ VD DGK++ LP+ ENFPD
Sbjct: 771 FKEPESVECVKMVNSIAEENWKKFTDAEYSPLQGHLLMYPLQVDMDGKVNPLPEHENFPD 830
Query: 402 AGGRILGAHSTTIPDILTT 346
GG+++GAHS +PD+LTT
Sbjct: 831 VGGKVIGAHSIQLPDVLTT 849
>gb|AAG53975.1|AF322228_1 phospholipase D delta [Arabidopsis thaliana]
gi|15987418|gb|AAL11978.1|AF306345_1 phospholipase D
[Arabidopsis thaliana]
Length = 857
Score = 110 bits (274), Expect = 2e-23
Identities = 47/79 (59%), Positives = 61/79 (76%)
Frame = -1
Query: 582 FEEPERLDCVRKVNAIAEDNWRKYASEDFSLLQGHLLKYPVPVDSDGKISSLPDCENFPD 403
F EP L+C++KVN I+E+NW+++ FS LQGHL+KYP+ VD DGK+S LPD E FPD
Sbjct: 779 FVEPSDLECLKKVNTISEENWKRFIDPKFSELQGHLIKYPLQVDVDGKVSPLPDYETFPD 838
Query: 402 AGGRILGAHSTTIPDILTT 346
GG+I+GAHS +PD LTT
Sbjct: 839 VGGKIIGAHSMALPDTLTT 857
>gb|AAL11625.1|AF424632_1 AT4g35790/F4B14_60 [Arabidopsis thaliana] gi|21360475|gb|AAM47353.1|
AT4g35790/F4B14_60 [Arabidopsis thaliana]
Length = 848
Score = 110 bits (274), Expect = 2e-23
Identities = 47/79 (59%), Positives = 61/79 (76%)
Frame = -1
Query: 582 FEEPERLDCVRKVNAIAEDNWRKYASEDFSLLQGHLLKYPVPVDSDGKISSLPDCENFPD 403
F EP L+C++KVN I+E+NW+++ FS LQGHL+KYP+ VD DGK+S LPD E FPD
Sbjct: 770 FVEPSDLECLKKVNTISEENWKRFIDPKFSELQGHLIKYPLQVDVDGKVSPLPDYETFPD 829
Query: 402 AGGRILGAHSTTIPDILTT 346
GG+I+GAHS +PD LTT
Sbjct: 830 VGGKIIGAHSMALPDTLTT 848
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 517,871,902
Number of Sequences: 1393205
Number of extensions: 10999254
Number of successful extensions: 28148
Number of sequences better than 10.0: 68
Number of HSP's better than 10.0 without gapping: 27353
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 28105
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 21997688174
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
