Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000814A_C02 KMC000814A_c02
(663 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|EAA05947.1| agCP13861 [Anopheles gambiae str. PEST] 34 2.0
dbj|BAB71796.1| Smad4 type4 [Cyprinus carpio] 33 3.4
pir||S20500 hydroxyproline-rich glycoprotein - rice gi|433816|em... 33 3.4
ref|NP_498516.1| Putative protein of eukaryotic origin [Caenorha... 32 9.9
>gb|EAA05947.1| agCP13861 [Anopheles gambiae str. PEST]
Length = 809
Score = 33.9 bits (76), Expect = 2.0
Identities = 30/121 (24%), Positives = 45/121 (36%), Gaps = 6/121 (4%)
Frame = +3
Query: 291 STCEVAASGSQPFPHF*LDQVKNALRQKNPFSENCFIPSHQNVPNYYQPY**NTILVDRH 470
S +VAA+ QP N L+ +P+ Q P ++QPY R
Sbjct: 663 SQMQVAAATGQPL------LAPNPLQIMSPYGPAIHAQPFQAAPPFHQPY--------RF 708
Query: 471 KQTSKGHKMINWTTRTYKTDPQPIKNPTANAPSPMK------PLVYQYQQHQEPSGHPTP 632
+T + ++ T P P + P P P YQ HQ+P+ +P P
Sbjct: 709 YETPQPGQIQYLAATPPSTTPSPGQPHQQYHPGPQPSPAGGGPPTYQTVHHQQPTPYPIP 768
Query: 633 V 635
V
Sbjct: 769 V 769
>dbj|BAB71796.1| Smad4 type4 [Cyprinus carpio]
Length = 568
Score = 33.1 bits (74), Expect = 3.4
Identities = 22/87 (25%), Positives = 38/87 (43%), Gaps = 9/87 (10%)
Frame = +3
Query: 402 PSHQNVPNYYQPY**NTIL------VDRHKQTSKGHKMINWT---TRTYKTDPQPIKNPT 554
P+H + P + QP + +H QT + + WT T +Y T P +N
Sbjct: 245 PTHPHAPTHSQPSSQQPSVSQSEYSTSKHTQTQETYHTTTWTGTSTASY-TPAGPQQNGR 303
Query: 555 ANAPSPMKPLVYQYQQHQEPSGHPTPV 635
++ +P + + QH P+ +P PV
Sbjct: 304 SHQQAPPPHTSHFWSQHHTPASYPQPV 330
>pir||S20500 hydroxyproline-rich glycoprotein - rice gi|433816|emb|CAA43583.1|
hydroxyproline-rich glycoprotein [Oryza sativa]
Length = 369
Score = 33.1 bits (74), Expect = 3.4
Identities = 15/43 (34%), Positives = 21/43 (47%)
Frame = +3
Query: 504 WTTRTYKTDPQPIKNPTANAPSPMKPLVYQYQQHQEPSGHPTP 632
+T TYK P+P PT P+P Y+ +P+ PTP
Sbjct: 281 YTPPTYKPQPKPTPTPTPYTPTPKPNPPPTYKPQPKPTPTPTP 323
>ref|NP_498516.1| Putative protein of eukaryotic origin [Caenorhabditis elegans]
gi|25395852|pir||G88493 protein F57B9.2 [imported] -
Caenorhabditis elegans gi|532816|gb|AAA21168.1|
Hypothetical protein F57B9.2 [Caenorhabditis elegans]
Length = 2500
Score = 31.6 bits (70), Expect = 9.9
Identities = 17/35 (48%), Positives = 18/35 (50%), Gaps = 1/35 (2%)
Frame = +3
Query: 531 PQPIKNPTANAPSPMKPLVYQYQ-QHQEPSGHPTP 632
P PI+ P AP PM P Q Q QHQ G P P
Sbjct: 733 PGPIQRPAQFAPQPMFPPQAQAQHQHQHMMGQPPP 767
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 590,800,151
Number of Sequences: 1393205
Number of extensions: 13450347
Number of successful extensions: 39139
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 36515
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 39026
length of database: 448,689,247
effective HSP length: 119
effective length of database: 282,897,852
effective search space used: 28572683052
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
