Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000808A_C01 KMC000808A_c01
(707 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||S37310 protoporphyrin IX magnesium chelatase (EC 4.99.1.-) ... 312 3e-84
pir||T07126 magnesium chelatase (EC 4.99.1.-) chain chlH - soybe... 310 1e-83
pir||T01789 protoporphyrin IX magnesium chelatase (EC 4.99.1.-) ... 305 4e-82
pir||S71288 protoporphyrin IX magnesium chelatase (EC 4.99.1.-) ... 297 1e-79
ref|NP_196867.1| cobalamin biosynthesis protein; protein id: At5... 297 1e-79
>pir||S37310 protoporphyrin IX magnesium chelatase (EC 4.99.1.-) - garden
snapdragon gi|312129|emb|CAA51664.1| protoporphyrin IX:Mg
Chelatase [Antirrhinum majus]
Length = 1379
Score = 312 bits (800), Expect = 3e-84
Identities = 151/158 (95%), Positives = 157/158 (98%)
Frame = -2
Query: 706 YFDSDPTNLVQNLRKDGKKPSAYIADTTTANAQVRTLAETVRLDARTKLLNPKWYEGMLS 527
YFDSDPTNLVQNLRKDGKKPSAYIADTTTAN+QVRTL+ETVRLDARTKLLNPKWYEGMLS
Sbjct: 1222 YFDSDPTNLVQNLRKDGKKPSAYIADTTTANSQVRTLSETVRLDARTKLLNPKWYEGMLS 1281
Query: 526 SGYEGVREIEKRLTNTVGWSATSGQVDNWVYEEANTTFIEDEQMLNKLMNTNPNSFRKLV 347
SGYEGVREIEKRLTNTVGWSATSGQVDNWVYEEANTTFIEDEQMLN+LMNTNPNSFRKL+
Sbjct: 1282 SGYEGVREIEKRLTNTVGWSATSGQVDNWVYEEANTTFIEDEQMLNRLMNTNPNSFRKLL 1341
Query: 346 QTFLEANGRGYWETSKQNIERLKQLYSEVEDKIEGIDR 233
QTFLEANGRGYWETS +NIERL+QLYSEVEDKIEGIDR
Sbjct: 1342 QTFLEANGRGYWETSAENIERLRQLYSEVEDKIEGIDR 1379
>pir||T07126 magnesium chelatase (EC 4.99.1.-) chain chlH - soybean
gi|3059095|emb|CAA04526.1| magnesium chelatase subunit
[Glycine max]
Length = 1383
Score = 310 bits (795), Expect = 1e-83
Identities = 150/158 (94%), Positives = 157/158 (98%)
Frame = -2
Query: 706 YFDSDPTNLVQNLRKDGKKPSAYIADTTTANAQVRTLAETVRLDARTKLLNPKWYEGMLS 527
YFDSDPTNLVQNLRKDGKKPSAYIADTTTANAQVRTL+ETVRLDARTKLLNPKWYEGMLS
Sbjct: 1226 YFDSDPTNLVQNLRKDGKKPSAYIADTTTANAQVRTLSETVRLDARTKLLNPKWYEGMLS 1285
Query: 526 SGYEGVREIEKRLTNTVGWSATSGQVDNWVYEEANTTFIEDEQMLNKLMNTNPNSFRKLV 347
+GYEGVREIEKRLTNTVGWSATSGQVDNWVYEEANTTFI+DEQMLNKLM+TNPNSFRKLV
Sbjct: 1286 TGYEGVREIEKRLTNTVGWSATSGQVDNWVYEEANTTFIQDEQMLNKLMSTNPNSFRKLV 1345
Query: 346 QTFLEANGRGYWETSKQNIERLKQLYSEVEDKIEGIDR 233
QTFLEANGRGYWETS+ NIE+L+QLYSEVEDKIEGIDR
Sbjct: 1346 QTFLEANGRGYWETSEDNIEKLRQLYSEVEDKIEGIDR 1383
>pir||T01789 protoporphyrin IX magnesium chelatase (EC 4.99.1.-) - common tobacco
gi|2318137|gb|AAB97152.1| Mg protoporphyrin IX chelatase
[Nicotiana tabacum]
Length = 1382
Score = 305 bits (781), Expect = 4e-82
Identities = 147/158 (93%), Positives = 156/158 (98%)
Frame = -2
Query: 706 YFDSDPTNLVQNLRKDGKKPSAYIADTTTANAQVRTLAETVRLDARTKLLNPKWYEGMLS 527
YFDSDPTNLVQNLRKDGKKPSAYIADTTTANAQVRTL+ETVRLDARTKLLNPKWYEGMLS
Sbjct: 1225 YFDSDPTNLVQNLRKDGKKPSAYIADTTTANAQVRTLSETVRLDARTKLLNPKWYEGMLS 1284
Query: 526 SGYEGVREIEKRLTNTVGWSATSGQVDNWVYEEANTTFIEDEQMLNKLMNTNPNSFRKLV 347
+GYEGVREIEKRLTNTVGWSATSGQVDNWV EEANTTFI+D++MLN+LMNTNPNSFRKL+
Sbjct: 1285 TGYEGVREIEKRLTNTVGWSATSGQVDNWVDEEANTTFIQDQEMLNRLMNTNPNSFRKLL 1344
Query: 346 QTFLEANGRGYWETSKQNIERLKQLYSEVEDKIEGIDR 233
QTFLEANGRGYWETS +NIE+LKQLYSEVEDKIEGIDR
Sbjct: 1345 QTFLEANGRGYWETSAENIEKLKQLYSEVEDKIEGIDR 1382
>pir||S71288 protoporphyrin IX magnesium chelatase (EC 4.99.1.-) chlH -
Arabidopsis thaliana gi|1154627|emb|CAA92802.1| magnesium
chelatase subunit [Arabidopsis thaliana]
Length = 1381
Score = 297 bits (760), Expect = 1e-79
Identities = 140/158 (88%), Positives = 156/158 (98%)
Frame = -2
Query: 706 YFDSDPTNLVQNLRKDGKKPSAYIADTTTANAQVRTLAETVRLDARTKLLNPKWYEGMLS 527
YFDSDPTNLVQ+LRKD KKPS+YIADTTTANAQVRTL+ETVRLDARTKLLNPKWYEGM+S
Sbjct: 1224 YFDSDPTNLVQSLRKDKKKPSSYIADTTTANAQVRTLSETVRLDARTKLLNPKWYEGMMS 1283
Query: 526 SGYEGVREIEKRLTNTVGWSATSGQVDNWVYEEANTTFIEDEQMLNKLMNTNPNSFRKLV 347
SGYEGVREIEKRL+NTVGWSATSGQVDNWVYEEAN+TFI+DE+MLN+LMNTNPNSFRK++
Sbjct: 1284 SGYEGVREIEKRLSNTVGWSATSGQVDNWVYEEANSTFIQDEEMLNRLMNTNPNSFRKML 1343
Query: 346 QTFLEANGRGYWETSKQNIERLKQLYSEVEDKIEGIDR 233
QTFLEANGRGYW+TS +NIE+LK+LYS+VEDKIEGIDR
Sbjct: 1344 QTFLEANGRGYWDTSAENIEKLKELYSQVEDKIEGIDR 1381
>ref|NP_196867.1| cobalamin biosynthesis protein; protein id: At5g13630.1, supported by
cDNA: gi_17978957, supported by cDNA: gi_18958006
[Arabidopsis thaliana] gi|9758028|dbj|BAB08689.1|
cobalamin biosynthesis protein [Arabidopsis thaliana]
gi|17978958|gb|AAL47483.1| AT5g13630/MSH12_9 [Arabidopsis
thaliana] gi|25141227|gb|AAN73308.1| At5g13630/MSH12_9
[Arabidopsis thaliana]
Length = 1381
Score = 297 bits (760), Expect = 1e-79
Identities = 140/158 (88%), Positives = 156/158 (98%)
Frame = -2
Query: 706 YFDSDPTNLVQNLRKDGKKPSAYIADTTTANAQVRTLAETVRLDARTKLLNPKWYEGMLS 527
YFDSDPTNLVQ+LRKD KKPS+YIADTTTANAQVRTL+ETVRLDARTKLLNPKWYEGM+S
Sbjct: 1224 YFDSDPTNLVQSLRKDKKKPSSYIADTTTANAQVRTLSETVRLDARTKLLNPKWYEGMMS 1283
Query: 526 SGYEGVREIEKRLTNTVGWSATSGQVDNWVYEEANTTFIEDEQMLNKLMNTNPNSFRKLV 347
SGYEGVREIEKRL+NTVGWSATSGQVDNWVYEEAN+TFI+DE+MLN+LMNTNPNSFRK++
Sbjct: 1284 SGYEGVREIEKRLSNTVGWSATSGQVDNWVYEEANSTFIQDEEMLNRLMNTNPNSFRKML 1343
Query: 346 QTFLEANGRGYWETSKQNIERLKQLYSEVEDKIEGIDR 233
QTFLEANGRGYW+TS +NIE+LK+LYS+VEDKIEGIDR
Sbjct: 1344 QTFLEANGRGYWDTSAENIEKLKELYSQVEDKIEGIDR 1381
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 599,225,141
Number of Sequences: 1393205
Number of extensions: 13007182
Number of successful extensions: 38796
Number of sequences better than 10.0: 142
Number of HSP's better than 10.0 without gapping: 37075
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 38691
length of database: 448,689,247
effective HSP length: 120
effective length of database: 281,504,647
effective search space used: 32373034405
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
