Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000807A_C01 KMC000807A_c01
(561 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_176533.1| ATP dependent copper transporter, putative; pro... 223 1e-57
pir||B96660 protein F2K11.18 [imported] - Arabidopsis thaliana g... 220 1e-56
gb|AAL02122.1| copper-transporting P-type ATPase [Brassica napus] 180 9e-45
ref|NP_199292.1| ATP dependent copper transporter; protein id: A... 179 3e-44
gb|AAK56262.1|AF367273_1 AT5g44790/K23L20_14 [Arabidopsis thaliana] 179 3e-44
>ref|NP_176533.1| ATP dependent copper transporter, putative; protein id: At1g63440.1
[Arabidopsis thaliana] gi|12229670|sp|Q9SH30|AHM7_ARATH
Potential copper-transporting ATPase 3
Length = 995
Score = 223 bits (568), Expect = 1e-57
Identities = 111/144 (77%), Positives = 128/144 (88%)
Frame = -2
Query: 560 KVKELQTSGYTVPMVGDGINDSPALVAADVGIAIGAGTDIAIEASDIVLMRSNLEDIIIA 381
KVKELQ +G+ V MVGDGINDSPALVAADVG+AIGAGTDIAIEA+DIVLM+SNLED+I A
Sbjct: 850 KVKELQAAGHVVAMVGDGINDSPALVAADVGMAIGAGTDIAIEAADIVLMKSNLEDVITA 909
Query: 380 LDLAKKTFSRIPLNYLWALGYNLLAIPIAAGILYPFIRFRLHPWIAGVAMAASSVRVVCS 201
+DL++KTFSRI LNY+WALGYNL+ IPIAAG+L+P RFRL PWIAG AMAASSV VVC
Sbjct: 910 IDLSRKTFSRIRLNYVWALGYNLMGIPIAAGVLFPGTRFRLPPWIAGAAMAASSVSVVCC 969
Query: 200 SLLLKFYKRPNQLNHLEINGIKIE 129
SLLLK YKRP +L+HLEI I++E
Sbjct: 970 SLLLKNYKRPKKLDHLEIREIQVE 993
>pir||B96660 protein F2K11.18 [imported] - Arabidopsis thaliana
gi|6633848|gb|AAF19707.1|AC008047_14 F2K11.18
[Arabidopsis thaliana]
Length = 1191
Score = 220 bits (560), Expect = 1e-56
Identities = 110/142 (77%), Positives = 126/142 (88%)
Frame = -2
Query: 560 KVKELQTSGYTVPMVGDGINDSPALVAADVGIAIGAGTDIAIEASDIVLMRSNLEDIIIA 381
KVKELQ +G+ V MVGDGINDSPALVAADVG+AIGAGTDIAIEA+DIVLM+SNLED+I A
Sbjct: 862 KVKELQAAGHVVAMVGDGINDSPALVAADVGMAIGAGTDIAIEAADIVLMKSNLEDVITA 921
Query: 380 LDLAKKTFSRIPLNYLWALGYNLLAIPIAAGILYPFIRFRLHPWIAGVAMAASSVRVVCS 201
+DL++KTFSRI LNY+WALGYNL+ IPIAAG+L+P RFRL PWIAG AMAASSV VVC
Sbjct: 922 IDLSRKTFSRIRLNYVWALGYNLMGIPIAAGVLFPGTRFRLPPWIAGAAMAASSVSVVCC 981
Query: 200 SLLLKFYKRPNQLNHLEINGIK 135
SLLLK YKRP +L+HLEI I+
Sbjct: 982 SLLLKNYKRPKKLDHLEIREIQ 1003
>gb|AAL02122.1| copper-transporting P-type ATPase [Brassica napus]
Length = 999
Score = 180 bits (457), Expect = 9e-45
Identities = 88/137 (64%), Positives = 111/137 (80%)
Frame = -2
Query: 557 VKELQTSGYTVPMVGDGINDSPALVAADVGIAIGAGTDIAIEASDIVLMRSNLEDIIIAL 378
++ LQ G TV MVGDGINDSPAL AADVG+AIGAGTD+AIEA+D VLMR+NLED+I A+
Sbjct: 860 IRSLQKDGSTVAMVGDGINDSPALAAADVGMAIGAGTDVAIEAADYVLMRNNLEDVITAI 919
Query: 377 DLAKKTFSRIPLNYLWALGYNLLAIPIAAGILYPFIRFRLHPWIAGVAMAASSVRVVCSS 198
DL++KT +RI LNY++A+ YN+++IPIAAG+ +P +R +L PW AG MA SSV VVCSS
Sbjct: 920 DLSRKTLTRIRLNYVFAMAYNVVSIPIAAGVFFPVLRVQLPPWAAGACMALSSVSVVCSS 979
Query: 197 LLLKFYKRPNQLNHLEI 147
LLL+ YK+P LEI
Sbjct: 980 LLLRRYKKPRLTTILEI 996
>ref|NP_199292.1| ATP dependent copper transporter; protein id: At5g44790.1, supported
by cDNA: gi_14194134, supported by cDNA: gi_4760369
[Arabidopsis thaliana] gi|12229667|sp|Q9S7J8|AHM5_ARATH
Copper-transporting ATPase RAN1 (Responsive-to-antagonist
1) gi|4760370|gb|AAD29109.1|AF082565_1 ATP dependent
copper transporter [Arabidopsis thaliana]
gi|4760380|gb|AAD29115.1| ATP dependent copper
transporter [Arabidopsis thaliana]
gi|6850337|gb|AAC79141.2| ATP dependent copper
transporter (RAN1) [Arabidopsis thaliana]
gi|9758383|dbj|BAB08832.1| ATP dependent copper
transporter [Arabidopsis thaliana]
Length = 1001
Score = 179 bits (453), Expect = 3e-44
Identities = 87/137 (63%), Positives = 111/137 (80%)
Frame = -2
Query: 557 VKELQTSGYTVPMVGDGINDSPALVAADVGIAIGAGTDIAIEASDIVLMRSNLEDIIIAL 378
++ LQ G TV MVGDGINDSPAL AADVG+AIGAGTD+AIEA+D VLMR+NLED+I A+
Sbjct: 862 IRSLQKDGSTVAMVGDGINDSPALAAADVGMAIGAGTDVAIEAADYVLMRNNLEDVITAI 921
Query: 377 DLAKKTFSRIPLNYLWALGYNLLAIPIAAGILYPFIRFRLHPWIAGVAMAASSVRVVCSS 198
DL++KT +RI LNY++A+ YN+++IPIAAG+ +P +R +L PW AG MA SSV VVCSS
Sbjct: 922 DLSRKTLTRIRLNYVFAMAYNVVSIPIAAGVFFPVLRVQLPPWAAGACMALSSVSVVCSS 981
Query: 197 LLLKFYKRPNQLNHLEI 147
LLL+ YK+P L+I
Sbjct: 982 LLLRRYKKPRLTTVLKI 998
>gb|AAK56262.1|AF367273_1 AT5g44790/K23L20_14 [Arabidopsis thaliana]
Length = 1001
Score = 179 bits (453), Expect = 3e-44
Identities = 87/137 (63%), Positives = 111/137 (80%)
Frame = -2
Query: 557 VKELQTSGYTVPMVGDGINDSPALVAADVGIAIGAGTDIAIEASDIVLMRSNLEDIIIAL 378
++ LQ G TV MVGDGINDSPAL AADVG+AIGAGTD+AIEA+D VLMR+NLED+I A+
Sbjct: 862 IRSLQKDGSTVAMVGDGINDSPALAAADVGMAIGAGTDVAIEAADYVLMRNNLEDVITAI 921
Query: 377 DLAKKTFSRIPLNYLWALGYNLLAIPIAAGILYPFIRFRLHPWIAGVAMAASSVRVVCSS 198
DL++KT +RI LNY++A+ YN+++IPIAAG+ +P +R +L PW AG MA SSV VVCSS
Sbjct: 922 DLSRKTLTRIRLNYVFAMAYNVVSIPIAAGVFFPVLRVQLPPWAAGACMALSSVSVVCSS 981
Query: 197 LLLKFYKRPNQLNHLEI 147
LLL+ YK+P L+I
Sbjct: 982 LLLRRYKKPRLTTVLKI 998
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 516,158,344
Number of Sequences: 1393205
Number of extensions: 12098265
Number of successful extensions: 35285
Number of sequences better than 10.0: 1396
Number of HSP's better than 10.0 without gapping: 33164
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 34803
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 20095422690
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
