Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000806A_C01 KMC000806A_c01
(579 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_189916.1| guanine nucleotide-exchange - like protein; pro... 86 4e-16
ref|NP_191645.1| guanine nucleotide exchange factor - like prote... 46 4e-04
ref|NP_171698.1| hypothetical protein; protein id: At1g01960.1 [... 45 5e-04
dbj|BAA82387.1| Similar to SEC7 protein, Saccharomyces cerevisia... 40 0.027
gb|AAM00191.1|AF262215_1 guanine nucleotide-exchange protein GEP... 39 0.047
>ref|NP_189916.1| guanine nucleotide-exchange - like protein; protein id: At3g43300.1
[Arabidopsis thaliana] gi|11357321|pir||T49244 guanine
nucleotide-exchange-like protein - Arabidopsis thaliana
gi|7649370|emb|CAB89051.1| guanine
nucleotide-exchange-like protein [Arabidopsis thaliana]
Length = 1669
Score = 85.5 bits (210), Expect = 4e-16
Identities = 35/58 (60%), Positives = 51/58 (87%)
Frame = -2
Query: 578 RAPIIIKVIQSMCSMDSQIFRRHLRELYPLLTKLVCCDPMDVRGALGDLFQSQLKALL 405
R+P+I+KV++ MC M++ IFR+H+RE YPLLT+LVCC+ M++RGAL +LF++QLK LL
Sbjct: 1610 RSPVIVKVLEGMCFMNNTIFRKHMREFYPLLTRLVCCEQMEIRGALANLFKAQLKPLL 1667
>ref|NP_191645.1| guanine nucleotide exchange factor - like protein; protein id:
At3g60860.1 [Arabidopsis thaliana]
gi|11357320|pir||T47897 guanine nucleotide exchange
factor-like protein - Arabidopsis thaliana
gi|7329696|emb|CAB82690.1| guanine nucleotide exchange
factor-like protein [Arabidopsis thaliana]
Length = 1793
Score = 45.8 bits (107), Expect = 4e-04
Identities = 20/51 (39%), Positives = 35/51 (68%), Gaps = 2/51 (3%)
Frame = -2
Query: 578 RAPIIIKVIQSMCSMDSQIFRRHLRELYPLLTKLVCCD--PMDVRGALGDL 432
RAP+I+ +Q+MC++D F ++L+ L+PLL L+ C+ +V+ AL D+
Sbjct: 1730 RAPLIVATLQAMCTLDEASFEKNLKCLFPLLANLISCEHGSNEVQTALADM 1780
>ref|NP_171698.1| hypothetical protein; protein id: At1g01960.1 [Arabidopsis thaliana]
gi|25518540|pir||E86151 hypothetical protein F22M8.9 -
Arabidopsis thaliana gi|8570447|gb|AAF76474.1|AC020622_8
Contains similarity to a guanine nucleotide exchange
factor from Homo sapiens gb|AF111162 and contains a Sec7
PF|01369 domain. [Arabidopsis thaliana]
Length = 1750
Score = 45.4 bits (106), Expect = 5e-04
Identities = 20/60 (33%), Positives = 40/60 (66%), Gaps = 2/60 (3%)
Frame = -2
Query: 578 RAPIIIKVIQSMCSMDSQIFRRHLRELYPLLTKLVCCD--PMDVRGALGDLFQSQLKALL 405
RAP+++ IQ++ +M +F+++L EL+PL+ L+ C+ +V+ AL D+ Q+ + +L
Sbjct: 1686 RAPLVVAAIQTLGNMGESLFKKNLPELFPLIATLISCEHGSGEVQVALSDMLQTSMGPVL 1745
>dbj|BAA82387.1| Similar to SEC7 protein, Saccharomyces cerevisiae, PIR2:S49764;
Contains Immunoglobulins and major histocompatibility
complex proteins signature. (AL022604) [Oryza sativa
(japonica cultivar-group)]
Length = 1687
Score = 39.7 bits (91), Expect = 0.027
Identities = 20/60 (33%), Positives = 37/60 (61%), Gaps = 2/60 (3%)
Frame = -2
Query: 578 RAPIIIKVIQSMCSMDSQIFRRHLRELYPLLTKLVCCDPM--DVRGALGDLFQSQLKALL 405
R +++ V+Q + ++ FRR+L +PLLT L+ C+ +V+ AL D+FQS + ++
Sbjct: 1626 RTSLVLHVMQLLGGLERDCFRRNLPLFFPLLTNLIRCEHSSGEVQLALYDIFQSSIGPII 1685
>gb|AAM00191.1|AF262215_1 guanine nucleotide-exchange protein GEP2 [Oryza sativa]
Length = 1789
Score = 38.9 bits (89), Expect = 0.047
Identities = 16/54 (29%), Positives = 33/54 (60%), Gaps = 2/54 (3%)
Frame = -2
Query: 578 RAPIIIKVIQSMCSMDSQIFRRHLRELYPLLTKLVCCD--PMDVRGALGDLFQS 423
RAP+++ +Q++ + F ++L + +PLL L+ C+ +V+ AL D+F +
Sbjct: 1726 RAPLVVSTLQAISGLGDSSFEKNLGQFFPLLAGLISCEHGSSEVQVALSDMFST 1779
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 468,013,376
Number of Sequences: 1393205
Number of extensions: 9348220
Number of successful extensions: 19501
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 18946
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19494
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 21426319650
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
