Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000805A_C01 KMC000805A_c01
(557 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
sp|P00062|CYC_SAMNI Cytochrome c gi|65507|pir||CCED cytochrome c... 154 9e-37
sp|P00060|CYC_LYCES Cytochrome c gi|65505|pir||CCTO cytochrome c... 152 2e-36
sp|P00050|CYC_BRAOL Cytochrome c gi|65494|pir||CCRPBN cytochrome... 151 5e-36
pir||CCRM cytochrome c - cuckoopint 150 8e-36
sp|P00053|CYC_CANSA Cytochrome c gi|65498|pir||CCHECC cytochrome... 150 8e-36
>sp|P00062|CYC_SAMNI Cytochrome c gi|65507|pir||CCED cytochrome c - European elder
Length = 111
Score = 154 bits (388), Expect = 9e-37
Identities = 72/75 (96%), Positives = 75/75 (100%)
Frame = -1
Query: 473 GPNLNGLFGRQSGTTAGYSYSAANKNMAVNWEEKTLYDYLLNPKKYIPGTKMVFPGLKKP 294
GPNLNGLFGRQSGTTAGYSYSAANKNMAVNWEEKTLYDYLLNPKKYIPGTKMVFPGLKKP
Sbjct: 37 GPNLNGLFGRQSGTTAGYSYSAANKNMAVNWEEKTLYDYLLNPKKYIPGTKMVFPGLKKP 96
Query: 293 QERADLIAYLKEATA 249
Q+RADLIAYLK++TA
Sbjct: 97 QDRADLIAYLKQSTA 111
>sp|P00060|CYC_LYCES Cytochrome c gi|65505|pir||CCTO cytochrome c [validated] - tomato
Length = 111
Score = 152 bits (385), Expect = 2e-36
Identities = 73/75 (97%), Positives = 73/75 (97%)
Frame = -1
Query: 473 GPNLNGLFGRQSGTTAGYSYSAANKNMAVNWEEKTLYDYLLNPKKYIPGTKMVFPGLKKP 294
GPNLNGLFGRQSGTTAGYSYSAANKNMAVNW E TLYDYLLNPKKYIPGTKMVFPGLKKP
Sbjct: 37 GPNLNGLFGRQSGTTAGYSYSAANKNMAVNWGENTLYDYLLNPKKYIPGTKMVFPGLKKP 96
Query: 293 QERADLIAYLKEATA 249
QERADLIAYLKEATA
Sbjct: 97 QERADLIAYLKEATA 111
>sp|P00050|CYC_BRAOL Cytochrome c gi|65494|pir||CCRPBN cytochrome c [validated] - rape
gi|65495|pir||CCRPBO cytochrome c - cauliflower
gi|229347|prf||711058A cytochrome c
Length = 111
Score = 151 bits (382), Expect = 5e-36
Identities = 72/75 (96%), Positives = 73/75 (97%)
Frame = -1
Query: 473 GPNLNGLFGRQSGTTAGYSYSAANKNMAVNWEEKTLYDYLLNPKKYIPGTKMVFPGLKKP 294
GPNLNGLFGRQSGTTAGYSYSAANKN AV WEEKTLYDYLLNPKKYIPGTKMVFPGLKKP
Sbjct: 37 GPNLNGLFGRQSGTTAGYSYSAANKNKAVEWEEKTLYDYLLNPKKYIPGTKMVFPGLKKP 96
Query: 293 QERADLIAYLKEATA 249
Q+RADLIAYLKEATA
Sbjct: 97 QDRADLIAYLKEATA 111
>pir||CCRM cytochrome c - cuckoopint
Length = 111
Score = 150 bits (380), Expect = 8e-36
Identities = 72/75 (96%), Positives = 73/75 (97%)
Frame = -1
Query: 473 GPNLNGLFGRQSGTTAGYSYSAANKNMAVNWEEKTLYDYLLNPKKYIPGTKMVFPGLKKP 294
GPNLNGLFGRQSGTTAGYSYSAANKNMAV WEE TLYDYLLNPKKYIPGTKMVFPGLKKP
Sbjct: 37 GPNLNGLFGRQSGTTAGYSYSAANKNMAVIWEESTLYDYLLNPKKYIPGTKMVFPGLKKP 96
Query: 293 QERADLIAYLKEATA 249
QERADLIAYLKE+TA
Sbjct: 97 QERADLIAYLKESTA 111
>sp|P00053|CYC_CANSA Cytochrome c gi|65498|pir||CCHECC cytochrome c [validated] - hemp
gi|229471|prf||732192A cytochrome c
Length = 111
Score = 150 bits (380), Expect = 8e-36
Identities = 69/75 (92%), Positives = 74/75 (98%)
Frame = -1
Query: 473 GPNLNGLFGRQSGTTAGYSYSAANKNMAVNWEEKTLYDYLLNPKKYIPGTKMVFPGLKKP 294
GPNLNGLFGRQSGTTAGYSYSAANKNMAV W++KTLYDYLLNPKKYIPGTKMVFPGLKKP
Sbjct: 37 GPNLNGLFGRQSGTTAGYSYSAANKNMAVTWZZKTLYDYLLNPKKYIPGTKMVFPGLKKP 96
Query: 293 QERADLIAYLKEATA 249
++RADLIAYLKE+TA
Sbjct: 97 ZBRADLIAYLKESTA 111
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 444,538,879
Number of Sequences: 1393205
Number of extensions: 8930214
Number of successful extensions: 18218
Number of sequences better than 10.0: 347
Number of HSP's better than 10.0 without gapping: 17802
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18152
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 19808345223
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
