Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000804A_C01 KMC000804A_c01
(515 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||A84498 probable protein kinase [imported] - Arabidopsis tha... 63 2e-09
ref|NP_565351.1| putative protein kinase; protein id: At2g11520.... 63 2e-09
pir||T01538 receptor-like protein kinase 5 homolog A_IG005I10.8 ... 49 3e-05
ref|NP_567170.2| coded for by A. thaliana cDNA R30513; protein i... 49 3e-05
dbj|BAB09637.1| contains similarity to protein kinase~gene_id:K1... 45 6e-04
>pir||A84498 probable protein kinase [imported] - Arabidopsis thaliana
Length = 310
Score = 63.2 bits (152), Expect = 2e-09
Identities = 27/50 (54%), Positives = 38/50 (76%)
Frame = -1
Query: 515 DPFMEEAVNADVLMKMLDLSFQCAAPIRTDRPNMKSVGEQLWAIRADYLK 366
DP E V+ +L KM L+FQCAAP + +RP+M++VG+QLWAIR+ YL+
Sbjct: 257 DPNARERVDEKILRKMFSLAFQCAAPTKKERPDMEAVGKQLWAIRSSYLR 306
>ref|NP_565351.1| putative protein kinase; protein id: At2g11520.1, supported by
cDNA: gi_13605880, supported by cDNA: gi_20334779
[Arabidopsis thaliana]
gi|13605881|gb|AAK32926.1|AF367339_1 At2g11520/F14P14.15
[Arabidopsis thaliana] gi|20198143|gb|AAD28055.2|
putative protein kinase [Arabidopsis thaliana]
gi|20334780|gb|AAM16251.1| At2g11520/F14P14.15
[Arabidopsis thaliana]
Length = 510
Score = 63.2 bits (152), Expect = 2e-09
Identities = 27/50 (54%), Positives = 38/50 (76%)
Frame = -1
Query: 515 DPFMEEAVNADVLMKMLDLSFQCAAPIRTDRPNMKSVGEQLWAIRADYLK 366
DP E V+ +L KM L+FQCAAP + +RP+M++VG+QLWAIR+ YL+
Sbjct: 457 DPNARERVDEKILRKMFSLAFQCAAPTKKERPDMEAVGKQLWAIRSSYLR 506
>pir||T01538 receptor-like protein kinase 5 homolog A_IG005I10.8 - Arabidopsis
thaliana gi|2252830|gb|AAB62829.1| weak similarity to
receptor protein kinase [Arabidopsis thaliana]
gi|6049872|gb|AAF02787.1|AF195115_7 weak similarity to
receptor protein kinase [Arabidopsis thaliana]
gi|7267120|emb|CAB80791.1| weak similarity to receptor
protein kinase, coded for by A. thaliana cDNA
R30513~similarity to~Contains Immunoglobulins and major
histocompatibility complex proteins signature
AA306-312;Protein kinases signatures and profile
AA39-61;Protein kinases signatures and profile
AA173-185~contains EST gb:AA394689, R30513 [Arabidopsis
thaliana]
Length = 341
Score = 49.3 bits (116), Expect = 3e-05
Identities = 24/49 (48%), Positives = 32/49 (64%), Gaps = 1/49 (2%)
Frame = -1
Query: 515 DPFMEE-AVNADVLMKMLDLSFQCAAPIRTDRPNMKSVGEQLWAIRADY 372
DP +E+ + N L K+L+++FQC AP R RP+MK E LW IR DY
Sbjct: 285 DPKLEQNSANNLALEKVLEMAFQCLAPHRRSRPSMKKCSEILWGIRKDY 333
>ref|NP_567170.2| coded for by A. thaliana cDNA R30513; protein id: At4g00330.1,
supported by cDNA: gi_17381215 [Arabidopsis thaliana]
gi|17381216|gb|AAL36420.1| unknown protein [Arabidopsis
thaliana] gi|22136738|gb|AAM91688.1| unknown protein
[Arabidopsis thaliana]
Length = 411
Score = 49.3 bits (116), Expect = 3e-05
Identities = 24/49 (48%), Positives = 32/49 (64%), Gaps = 1/49 (2%)
Frame = -1
Query: 515 DPFMEE-AVNADVLMKMLDLSFQCAAPIRTDRPNMKSVGEQLWAIRADY 372
DP +E+ + N L K+L+++FQC AP R RP+MK E LW IR DY
Sbjct: 355 DPKLEQNSANNLALEKVLEMAFQCLAPHRRSRPSMKKCSEILWGIRKDY 403
>dbj|BAB09637.1| contains similarity to protein kinase~gene_id:K19M22.13
[Arabidopsis thaliana]
Length = 470
Score = 44.7 bits (104), Expect = 6e-04
Identities = 22/48 (45%), Positives = 30/48 (61%), Gaps = 1/48 (2%)
Frame = -1
Query: 515 DPFMEEAVNA-DVLMKMLDLSFQCAAPIRTDRPNMKSVGEQLWAIRAD 375
DPF++ A +V KML L+ +C P R RP MK + E+LWAIR +
Sbjct: 380 DPFLKRNRAAIEVAEKMLRLASECVTPTRATRPAMKGIAEKLWAIRRE 427
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 436,619,478
Number of Sequences: 1393205
Number of extensions: 8847557
Number of successful extensions: 19059
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 18676
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19053
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 16154357632
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
