Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000803A_C01 KMC000803A_c01
(594 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAM13844.1| unknown protein [Arabidopsis thaliana] 32 6.1
gb|AAF24949.1|AC012375_12 T22C5.20 [Arabidopsis thaliana] 32 6.1
ref|NP_174096.1| hypothetical protein; protein id: At1g27750.1 [... 32 6.1
>gb|AAM13844.1| unknown protein [Arabidopsis thaliana]
Length = 1075
Score = 32.0 bits (71), Expect = 6.1
Identities = 19/69 (27%), Positives = 39/69 (55%), Gaps = 2/69 (2%)
Frame = +1
Query: 31 IHSVVYKKLTYFWILSLEYKQ--QLLLYTPRYVKGSASVAKQVCRKLNDGANLPLMHIVE 204
I S V++ + F++LS E K Q++ + ++ + Q+ +KL+DG +LPL+ + +
Sbjct: 185 ICSAVFRNVLTFFVLSFEGKNIFQIVDKSDLKLQDPDEIFSQLMQKLSDGNSLPLIKLSQ 244
Query: 205 QRITLIALV 231
R+ + V
Sbjct: 245 FRVLALLKV 253
>gb|AAF24949.1|AC012375_12 T22C5.20 [Arabidopsis thaliana]
Length = 1840
Score = 32.0 bits (71), Expect = 6.1
Identities = 19/69 (27%), Positives = 39/69 (55%), Gaps = 2/69 (2%)
Frame = +1
Query: 31 IHSVVYKKLTYFWILSLEYKQ--QLLLYTPRYVKGSASVAKQVCRKLNDGANLPLMHIVE 204
I S V++ + F++LS E K Q++ + ++ + Q+ +KL+DG +LPL+ + +
Sbjct: 185 ICSAVFRNVLTFFVLSFEGKNIFQIVDKSDLKLQDPDEIFSQLMQKLSDGNSLPLIKLSQ 244
Query: 205 QRITLIALV 231
R+ + V
Sbjct: 245 FRVLALLKV 253
>ref|NP_174096.1| hypothetical protein; protein id: At1g27750.1 [Arabidopsis
thaliana]
Length = 1975
Score = 32.0 bits (71), Expect = 6.1
Identities = 19/69 (27%), Positives = 39/69 (55%), Gaps = 2/69 (2%)
Frame = +1
Query: 31 IHSVVYKKLTYFWILSLEYKQ--QLLLYTPRYVKGSASVAKQVCRKLNDGANLPLMHIVE 204
I S V++ + F++LS E K Q++ + ++ + Q+ +KL+DG +LPL+ + +
Sbjct: 185 ICSAVFRNVLTFFVLSFEGKNIFQIVDKSDLKLQDPDEIFSQLMQKLSDGNSLPLIKLSQ 244
Query: 205 QRITLIALV 231
R+ + V
Sbjct: 245 FRVLALLKV 253
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 463,753,811
Number of Sequences: 1393205
Number of extensions: 8950211
Number of successful extensions: 14402
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 14052
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14402
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 22854740960
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
