Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000802A_C01 KMC000802A_c01
(571 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_173002.1| unknown protein; protein id: At1g15490.1, suppo... 100 1e-20
ref|NP_178144.1| unknown protein; protein id: At1g80280.1, suppo... 99 5e-20
dbj|BAC00606.1| OJ1316_H05.1 [Oryza sativa (japonica cultivar-gr... 91 1e-17
ref|NP_175684.2| unknown protein; protein id: At1g52750.1, suppo... 82 5e-15
pir||E96568 unknown protein, 18223-15857 [imported] - Arabidopsi... 82 5e-15
>ref|NP_173002.1| unknown protein; protein id: At1g15490.1, supported by cDNA:
gi_17529297 [Arabidopsis thaliana]
gi|5103847|gb|AAD39677.1|AC007591_42 Contains PF|00561
alpha/beta hydrolase fold. [Arabidopsis thaliana]
gi|17529298|gb|AAL38876.1| unknown protein [Arabidopsis
thaliana] gi|26983890|gb|AAN86197.1| unknown protein
[Arabidopsis thaliana]
Length = 648
Score = 100 bits (250), Expect = 1e-20
Identities = 51/65 (78%), Positives = 56/65 (85%)
Frame = -3
Query: 569 LVIAGAEDLLVSLKTSQAMASKFKNSRLVAISECGHLPHEECPKALLAAISPFISRLLLA 390
LVIAGAED LV LK+SQ MASK NSRLVAIS CGHLPHEECPKALLAA+SPFI+RL++
Sbjct: 583 LVIAGAEDALVPLKSSQGMASKLLNSRLVAISGCGHLPHEECPKALLAAMSPFITRLVIR 642
Query: 389 SDLPS 375
DL S
Sbjct: 643 PDLQS 647
>ref|NP_178144.1| unknown protein; protein id: At1g80280.1, supported by cDNA:
gi_20466449 [Arabidopsis thaliana]
gi|25406649|pir||C96834 unknown protein F5I6.3
[imported] - Arabidopsis thaliana
gi|12324976|gb|AAG52432.1|AC018848_3 unknown protein;
13661-11359 [Arabidopsis thaliana]
gi|20466450|gb|AAM20542.1| unknown protein [Arabidopsis
thaliana] gi|23198130|gb|AAN15592.1| unknown protein
[Arabidopsis thaliana]
Length = 647
Score = 98.6 bits (244), Expect = 5e-20
Identities = 48/62 (77%), Positives = 54/62 (86%)
Frame = -3
Query: 569 LVIAGAEDLLVSLKTSQAMASKFKNSRLVAISECGHLPHEECPKALLAAISPFISRLLLA 390
LV+AGAED LV LK+SQ MASK +NSRLVAIS CGHLPHEECPKALLAA+ PFISRL+ +
Sbjct: 586 LVVAGAEDALVPLKSSQVMASKLENSRLVAISGCGHLPHEECPKALLAAMCPFISRLVFS 645
Query: 389 SD 384
D
Sbjct: 646 ED 647
>dbj|BAC00606.1| OJ1316_H05.1 [Oryza sativa (japonica cultivar-group)]
gi|21901991|dbj|BAC05542.1| P0038D11.18 [Oryza sativa
(japonica cultivar-group)]
Length = 629
Score = 90.5 bits (223), Expect = 1e-17
Identities = 43/62 (69%), Positives = 52/62 (83%)
Frame = -3
Query: 569 LVIAGAEDLLVSLKTSQAMASKFKNSRLVAISECGHLPHEECPKALLAAISPFISRLLLA 390
LV+AG+ED LVS K++Q MAS+ NSRLV IS CGHLPHEECPKALL+A+SPFIS L+ +
Sbjct: 563 LVVAGSEDALVSSKSTQVMASRLVNSRLVTISNCGHLPHEECPKALLSALSPFISGLVSS 622
Query: 389 SD 384
D
Sbjct: 623 DD 624
>ref|NP_175684.2| unknown protein; protein id: At1g52750.1, supported by cDNA:
gi_19310417 [Arabidopsis thaliana]
gi|19310418|gb|AAL84946.1| At1g52750/F14G24_2
[Arabidopsis thaliana] gi|23506029|gb|AAN28874.1|
At1g52750/F14G24_2 [Arabidopsis thaliana]
Length = 523
Score = 82.0 bits (201), Expect = 5e-15
Identities = 39/58 (67%), Positives = 46/58 (79%)
Frame = -3
Query: 569 LVIAGAEDLLVSLKTSQAMASKFKNSRLVAISECGHLPHEECPKALLAAISPFISRLL 396
LV+AGAED LV LK+SQ +ASK NSRLV IS CGHLPHEECP L++A+ FI RL+
Sbjct: 460 LVVAGAEDALVPLKSSQVLASKLTNSRLVEISGCGHLPHEECPTTLVSALGSFICRLI 517
>pir||E96568 unknown protein, 18223-15857 [imported] - Arabidopsis thaliana
gi|12324631|gb|AAG52267.1|AC019018_4 unknown protein;
18223-15857 [Arabidopsis thaliana]
Length = 614
Score = 82.0 bits (201), Expect = 5e-15
Identities = 39/58 (67%), Positives = 46/58 (79%)
Frame = -3
Query: 569 LVIAGAEDLLVSLKTSQAMASKFKNSRLVAISECGHLPHEECPKALLAAISPFISRLL 396
LV+AGAED LV LK+SQ +ASK NSRLV IS CGHLPHEECP L++A+ FI RL+
Sbjct: 551 LVVAGAEDALVPLKSSQVLASKLTNSRLVEISGCGHLPHEECPTTLVSALGSFICRLI 608
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 470,136,149
Number of Sequences: 1393205
Number of extensions: 9934724
Number of successful extensions: 39004
Number of sequences better than 10.0: 140
Number of HSP's better than 10.0 without gapping: 31607
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 36541
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 20956655091
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
