Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000797A_C01 KMC000797A_c01
(611 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAK73804.1| ORF470 [Eimeria reedi] 36 0.45
gb|AAK73802.1| ORF470 [Eimeria onychomysis] 35 0.59
gb|AAK73799.1| ORF470 [Eimeria arizonensis] 35 0.77
gb|AAK73798.1| ORF470 [Eimeria albigulae] 35 0.77
gb|AAK73803.1| ORF470 [Eimeria papillata] 34 1.7
>gb|AAK73804.1| ORF470 [Eimeria reedi]
Length = 234
Score = 35.8 bits (81), Expect = 0.45
Identities = 15/39 (38%), Positives = 25/39 (63%)
Frame = -3
Query: 396 VDLLPSLIFTLYITLDSAEDNSFTDIATTVFSSSNFGFV 280
++ PSL+F+ T+ S EDN F + +T+FS +F F+
Sbjct: 59 INYFPSLVFSYLGTIVSLEDNFFATLNSTIFSGGSFCFI 97
>gb|AAK73802.1| ORF470 [Eimeria onychomysis]
Length = 233
Score = 35.4 bits (80), Expect = 0.59
Identities = 15/39 (38%), Positives = 25/39 (63%)
Frame = -3
Query: 396 VDLLPSLIFTLYITLDSAEDNSFTDIATTVFSSSNFGFV 280
++ PSL+F+ T+ S EDN F + +T+FS +F F+
Sbjct: 58 LNFFPSLVFSYVGTIVSLEDNFFATLNSTIFSGGSFCFI 96
>gb|AAK73799.1| ORF470 [Eimeria arizonensis]
Length = 233
Score = 35.0 bits (79), Expect = 0.77
Identities = 15/39 (38%), Positives = 25/39 (63%)
Frame = -3
Query: 396 VDLLPSLIFTLYITLDSAEDNSFTDIATTVFSSSNFGFV 280
++ PSL+F+ T+ S EDN F + +T+FS +F F+
Sbjct: 58 LNCFPSLVFSYVGTIVSLEDNFFATLNSTIFSGGSFCFI 96
>gb|AAK73798.1| ORF470 [Eimeria albigulae]
Length = 233
Score = 35.0 bits (79), Expect = 0.77
Identities = 15/39 (38%), Positives = 25/39 (63%)
Frame = -3
Query: 396 VDLLPSLIFTLYITLDSAEDNSFTDIATTVFSSSNFGFV 280
++ PSL+F+ T+ S EDN F + +T+FS +F F+
Sbjct: 58 LNYFPSLVFSYVGTIVSLEDNFFATLNSTIFSGGSFCFI 96
>gb|AAK73803.1| ORF470 [Eimeria papillata]
Length = 235
Score = 33.9 bits (76), Expect = 1.7
Identities = 15/39 (38%), Positives = 24/39 (61%)
Frame = -3
Query: 396 VDLLPSLIFTLYITLDSAEDNSFTDIATTVFSSSNFGFV 280
++ P LIF+ T+ S EDN F + +T+FS +F F+
Sbjct: 59 INYFPYLIFSYVGTIVSLEDNFFATLNSTIFSGGSFCFI 97
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 523,220,504
Number of Sequences: 1393205
Number of extensions: 10786045
Number of successful extensions: 25114
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 24311
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25110
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 24568846532
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
