Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000794A_C01 KMC000794A_c01
(615 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAD03433.1| contains similarity to ubiquitin carboxyl-termina... 134 1e-30
pir||T04194 hypothetical protein T4F9.50 - Arabidopsis thaliana ... 129 4e-29
gb|AAD03434.1| contains similarity to ubiquitin carboxyl-termina... 129 4e-29
ref|NP_567363.1| putative protein; protein id: At4g10590.1, supp... 129 4e-29
ref|NP_192795.1| putative protein; protein id: At4g10570.1 [Arab... 121 8e-27
>gb|AAD03433.1| contains similarity to ubiquitin carboxyl-terminal hydrolase family
2 (Pfam:PF00443, score=48.3, E=3.5e-13, N=2) and
(Pfam:PF00442, Score=40.0 E=5.2e-08, N=1) [Arabidopsis
thaliana]
Length = 1028
Score = 134 bits (336), Expect = 1e-30
Identities = 70/141 (49%), Positives = 94/141 (66%)
Frame = +1
Query: 190 MTIADSVFPMDNGASCVPLTPEEENRIVSELIQESELNLKEGQLFYVISNRWFSRWQRYA 369
MTI +S F ++NG +P TPEEE RIVSEL ESE NLK+G L++VIS RW++ WQ Y
Sbjct: 1 MTIPNSDFMLENGVCDLPFTPEEEKRIVSELTSESEDNLKQGNLYFVISKRWYTSWQEY- 59
Query: 370 GPCVGILSTDNQSSDGQHANTIHSEIGDRPGQIDNSDIISNGNNCDGNNFDIHRMLEEGK 549
+ ++ N+ S G+ S RPG IDN DII ++ D N+ + R+L EG+
Sbjct: 60 -----VENSANECSTGE------SSEAPRPGPIDNHDIIE--SDSDINDPQLRRLLVEGE 106
Query: 550 DYVLVPQKVWERLLEWYKGGP 612
DYVLVP++VW+RL+EWY GGP
Sbjct: 107 DYVLVPKQVWKRLVEWYSGGP 127
>pir||T04194 hypothetical protein T4F9.50 - Arabidopsis thaliana
gi|4539437|emb|CAB40025.1| putative protein [Arabidopsis
thaliana] gi|7267756|emb|CAB78182.1| putative protein
[Arabidopsis thaliana]
Length = 937
Score = 129 bits (323), Expect = 4e-29
Identities = 70/141 (49%), Positives = 90/141 (63%)
Frame = +1
Query: 190 MTIADSVFPMDNGASCVPLTPEEENRIVSELIQESELNLKEGQLFYVISNRWFSRWQRYA 369
MTI +S F ++NG P TPEEE RIVSELI ESE NLKEG L++VIS RW++ W++Y
Sbjct: 1 MTIPNSDFMIENGVCDFPTTPEEEKRIVSELITESEDNLKEGNLYFVISKRWYTSWEKYV 60
Query: 370 GPCVGILSTDNQSSDGQHANTIHSEIGDRPGQIDNSDIISNGNNCDGNNFDIHRMLEEGK 549
+ S ++ + SE RPG IDN DII + D N+ + R+L E
Sbjct: 61 -----------EQSTKEYISGESSE-ASRPGPIDNHDIIE--SESDVNDPQLRRLLMERV 106
Query: 550 DYVLVPQKVWERLLEWYKGGP 612
DYVLVPQ+VW+RL+EWY GGP
Sbjct: 107 DYVLVPQEVWKRLVEWYSGGP 127
>gb|AAD03434.1| contains similarity to ubiquitin carboxyl-terminal hydrolase family
2 (Pfam:PF00443, score=40.0, E=5.2e-08, N=1) and
(Pfam:PF00442, Score=37.9 E=5.3e-10, N=1) [Arabidopsis
thaliana]
Length = 887
Score = 129 bits (323), Expect = 4e-29
Identities = 70/141 (49%), Positives = 90/141 (63%)
Frame = +1
Query: 190 MTIADSVFPMDNGASCVPLTPEEENRIVSELIQESELNLKEGQLFYVISNRWFSRWQRYA 369
MTI +S F ++NG P TPEEE RIVSELI ESE NLKEG L++VIS RW++ W++Y
Sbjct: 1 MTIPNSDFMIENGVCDFPTTPEEEKRIVSELITESEDNLKEGNLYFVISKRWYTSWEKYV 60
Query: 370 GPCVGILSTDNQSSDGQHANTIHSEIGDRPGQIDNSDIISNGNNCDGNNFDIHRMLEEGK 549
+ S ++ + SE RPG IDN DII + D N+ + R+L E
Sbjct: 61 -----------EQSTKEYISGESSE-ASRPGPIDNHDIIE--SESDVNDPQLRRLLMERV 106
Query: 550 DYVLVPQKVWERLLEWYKGGP 612
DYVLVPQ+VW+RL+EWY GGP
Sbjct: 107 DYVLVPQEVWKRLVEWYSGGP 127
>ref|NP_567363.1| putative protein; protein id: At4g10590.1, supported by cDNA:
gi_15450766 [Arabidopsis thaliana]
gi|15450767|gb|AAK96655.1| putative protein [Arabidopsis
thaliana]
Length = 910
Score = 129 bits (323), Expect = 4e-29
Identities = 70/141 (49%), Positives = 90/141 (63%)
Frame = +1
Query: 190 MTIADSVFPMDNGASCVPLTPEEENRIVSELIQESELNLKEGQLFYVISNRWFSRWQRYA 369
MTI +S F ++NG P TPEEE RIVSELI ESE NLKEG L++VIS RW++ W++Y
Sbjct: 1 MTIPNSDFMIENGVCDFPTTPEEEKRIVSELITESEDNLKEGNLYFVISKRWYTSWEKYV 60
Query: 370 GPCVGILSTDNQSSDGQHANTIHSEIGDRPGQIDNSDIISNGNNCDGNNFDIHRMLEEGK 549
+ S ++ + SE RPG IDN DII + D N+ + R+L E
Sbjct: 61 -----------EQSTKEYISGESSE-ASRPGPIDNHDIIE--SESDVNDPQLRRLLMERV 106
Query: 550 DYVLVPQKVWERLLEWYKGGP 612
DYVLVPQ+VW+RL+EWY GGP
Sbjct: 107 DYVLVPQEVWKRLVEWYSGGP 127
>ref|NP_192795.1| putative protein; protein id: At4g10570.1 [Arabidopsis thaliana]
gi|7487639|pir||T04192 hypothetical protein T4F9.30 -
Arabidopsis thaliana gi|4539435|emb|CAB40023.1| putative
protein [Arabidopsis thaliana]
gi|7267754|emb|CAB78180.1| putative protein [Arabidopsis
thaliana]
Length = 928
Score = 121 bits (303), Expect = 8e-27
Identities = 68/141 (48%), Positives = 92/141 (65%)
Frame = +1
Query: 190 MTIADSVFPMDNGASCVPLTPEEENRIVSELIQESELNLKEGQLFYVISNRWFSRWQRYA 369
MTI +S F ++NG +P TPEEE RIVSEL ESE NLK+G L++VIS RW++ WQ Y
Sbjct: 1 MTIPNSDFMLENGVCDLPFTPEEEKRIVSELTSESEDNLKQGNLYFVISKRWYTSWQEY- 59
Query: 370 GPCVGILSTDNQSSDGQHANTIHSEIGDRPGQIDNSDIISNGNNCDGNNFDIHRMLEEGK 549
+ ++ N+ S G+ S RPG IDN DII ++ D N+ + R+L EG+
Sbjct: 60 -----VENSANECSTGE------SSEAPRPGPIDNHDIIE--SDSDINDPQLRRLLVEGE 106
Query: 550 DYVLVPQKVWERLLEWYKGGP 612
DYVLVP++VW+RL+E GGP
Sbjct: 107 DYVLVPKQVWKRLVEC--GGP 125
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 555,842,402
Number of Sequences: 1393205
Number of extensions: 12396710
Number of successful extensions: 39517
Number of sequences better than 10.0: 74
Number of HSP's better than 10.0 without gapping: 34732
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 38829
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 24854530794
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
