Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000792A_C01 KMC000792A_c01
(677 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAL47464.1| At5g11350/F2I11_240 [Arabidopsis thaliana] gi|235... 110 1e-23
ref|NP_196696.2| putative protein; protein id: At5g11350.1, supp... 110 1e-23
emb|CAB96670.1| putative protein [Arabidopsis thaliana] 110 1e-23
dbj|BAB01117.1| gene_id:MYF24.23~unknown protein [Arabidopsis th... 61 1e-08
ref|NP_586383.1| similarity to CARBON CATABOLITE REPRESSOR PROTE... 40 0.022
>gb|AAL47464.1| At5g11350/F2I11_240 [Arabidopsis thaliana]
gi|23506113|gb|AAN28916.1| At5g11350/F2I11_240
[Arabidopsis thaliana]
Length = 754
Score = 110 bits (276), Expect = 1e-23
Identities = 49/55 (89%), Positives = 50/55 (90%)
Frame = -2
Query: 676 HRCFSGTVDYIWRSEGLQTTRVLAPIPKHVMEWTPGFPTKKWGSDHIALVSELAF 512
HRCF GTVDYIWRSEGLQT RVLAPIPK M+WTPGFPT KWGSDHIALVSELAF
Sbjct: 691 HRCFMGTVDYIWRSEGLQTVRVLAPIPKQAMQWTPGFPTPKWGSDHIALVSELAF 745
>ref|NP_196696.2| putative protein; protein id: At5g11350.1, supported by cDNA:
gi_17979009 [Arabidopsis thaliana]
Length = 754
Score = 110 bits (276), Expect = 1e-23
Identities = 49/55 (89%), Positives = 50/55 (90%)
Frame = -2
Query: 676 HRCFSGTVDYIWRSEGLQTTRVLAPIPKHVMEWTPGFPTKKWGSDHIALVSELAF 512
HRCF GTVDYIWRSEGLQT RVLAPIPK M+WTPGFPT KWGSDHIALVSELAF
Sbjct: 691 HRCFMGTVDYIWRSEGLQTVRVLAPIPKQAMQWTPGFPTPKWGSDHIALVSELAF 745
>emb|CAB96670.1| putative protein [Arabidopsis thaliana]
Length = 700
Score = 110 bits (276), Expect = 1e-23
Identities = 49/55 (89%), Positives = 50/55 (90%)
Frame = -2
Query: 676 HRCFSGTVDYIWRSEGLQTTRVLAPIPKHVMEWTPGFPTKKWGSDHIALVSELAF 512
HRCF GTVDYIWRSEGLQT RVLAPIPK M+WTPGFPT KWGSDHIALVSELAF
Sbjct: 637 HRCFMGTVDYIWRSEGLQTVRVLAPIPKQAMQWTPGFPTPKWGSDHIALVSELAF 691
>dbj|BAB01117.1| gene_id:MYF24.23~unknown protein [Arabidopsis thaliana]
Length = 445
Score = 61.2 bits (147), Expect = 1e-08
Identities = 30/59 (50%), Positives = 38/59 (63%)
Frame = -2
Query: 676 HRCFSGTVDYIWRSEGLQTTRVLAPIPKHVMEWTPGFPTKKWGSDHIALVSELAFLKEG 500
H F GTVDY+W S+GL RVL +P V+ T G P ++ GSDH+ALVSE F +G
Sbjct: 387 HSKFLGTVDYLWYSDGLLPARVLDTLPIDVLCKTKGLPCQELGSDHLALVSEFVFEPDG 445
>ref|NP_586383.1| similarity to CARBON CATABOLITE REPRESSOR PROTEIN 4
[Encephalitozoon cuniculi] gi|19069602|emb|CAD25987.1|
similarity to CARBON CATABOLITE REPRESSOR PROTEIN 4
[Encephalitozoon cuniculi]
Length = 493
Score = 40.4 bits (93), Expect = 0.022
Identities = 19/52 (36%), Positives = 27/52 (51%)
Frame = -2
Query: 667 FSGTVDYIWRSEGLQTTRVLAPIPKHVMEWTPGFPTKKWGSDHIALVSELAF 512
F G +DYI+ G+ VL+P+ E G P + SDHI L ++ AF
Sbjct: 426 FKGVIDYIFYGGGISLASVLSPVEDEYTENVAGLPNMHFPSDHIFLGAKFAF 477
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 560,664,648
Number of Sequences: 1393205
Number of extensions: 11720660
Number of successful extensions: 23401
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 22745
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23390
length of database: 448,689,247
effective HSP length: 119
effective length of database: 282,897,852
effective search space used: 29987172312
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
