Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000791A_C01 KMC000791A_c01
(697 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAC02202.1| resistance protein candidate [Lactuca sativa] 37 0.34
ref|NP_715619.1| 4-hydroxybenzoate polyprenyltransferase and rel... 37 0.34
gb|AAM22655.1|AF469112_10 unknown [Helicobacter pylori] 35 0.76
gb|EAA18156.1| putative bir1 protein [Plasmodium yoelii yoelii] 34 2.2
ref|NP_609891.1| CG10391-PA [Drosophila melanogaster] gi|1138666... 34 2.2
>gb|AAC02202.1| resistance protein candidate [Lactuca sativa]
Length = 775
Score = 36.6 bits (83), Expect = 0.34
Identities = 20/49 (40%), Positives = 28/49 (56%), Gaps = 2/49 (4%)
Frame = -1
Query: 550 KIIRSVDIEKE--KLISNLGIVLKMVEDTNRTEKVNDAVMEWLNDAEKL 410
KI+RS IE E KL L + ++ D ++ E N+AV WLND + L
Sbjct: 24 KIVRSKRIESELKKLKETLDQIQDLLNDASQKEVTNEAVKRWLNDLQHL 72
>ref|NP_715619.1| 4-hydroxybenzoate polyprenyltransferase and related
prenyltransferases [Wigglesworthia brevipalpis]
gi|25166082|dbj|BAC24273.1| ubiA [Wigglesworthia
brevipalpis]
Length = 273
Score = 36.6 bits (83), Expect = 0.34
Identities = 32/105 (30%), Positives = 54/105 (50%), Gaps = 9/105 (8%)
Frame = +3
Query: 336 TNNRP-VKEILDFPASIFIFNISSSMSF--------SASFNHSITASLTFSVLFVSSTIF 488
T NRP +K+ +D +IFIF I ++SF SF S+ A L ++ + +
Sbjct: 65 TKNRPLIKKNIDITEAIFIFLIFITLSFFLVILLNNKKSFFISLIA-LILMCIYPTIKRY 123
Query: 489 STMPRFEISFSFSMSTLLMIFQTRNG*APSRINSTSNNY*IFHSN 623
S+ P+ + SFS+S +LM++ ++IN S + +F SN
Sbjct: 124 SSFPQLFLGVSFSLS-ILMVYSV------TKINFNSTCWFLFFSN 161
>gb|AAM22655.1|AF469112_10 unknown [Helicobacter pylori]
Length = 123
Score = 35.4 bits (80), Expect = 0.76
Identities = 21/52 (40%), Positives = 31/52 (59%), Gaps = 1/52 (1%)
Frame = +3
Query: 387 IFNISSSMSFSASFNHSITASLTFSVLFVSSTIFS-TMPRFEISFSFSMSTL 539
+ N+SSS SFS +F+ S +S + S+LF SS + R +S FS+S L
Sbjct: 31 VLNLSSSFSFSINFSFSSNSSFSVSLLFNSSCCLALAFKRIFLSTCFSISNL 82
>gb|EAA18156.1| putative bir1 protein [Plasmodium yoelii yoelii]
Length = 316
Score = 33.9 bits (76), Expect = 2.2
Identities = 20/66 (30%), Positives = 32/66 (48%)
Frame = -1
Query: 532 DIEKEKLISNLGIVLKMVEDTNRTEKVNDAVMEWLNDAEKLIEEEMLKIKMEAGKSNISF 353
+ EK K + ++ I L + R +KVN V + + E E + L +M SNI+
Sbjct: 208 NFEKSKALRSISIDLPQLPTEKRAQKVNQEVPKEIKTTETSSESDKLDTEMTNLSSNITL 267
Query: 352 TGLLLV 335
+G LV
Sbjct: 268 SGSSLV 273
>ref|NP_609891.1| CG10391-PA [Drosophila melanogaster]
gi|11386664|sp|Q9VJ71|C310_DROME Probable cytochrome
P450 310a1 (CYPCCCXA1) gi|7298462|gb|AAF53683.1|
CG10391-PA [Drosophila melanogaster]
gi|17862670|gb|AAL39812.1| LD44491p [Drosophila
melanogaster]
Length = 492
Score = 33.9 bits (76), Expect = 2.2
Identities = 24/93 (25%), Positives = 52/93 (55%), Gaps = 10/93 (10%)
Frame = -1
Query: 580 REGAYPFRVWKIIR-SVDIEKEKLISNLGIVLKMVEDTNRTEKVNDA-VMEWLNDAEKLI 407
++ +Y +R+ +I+ SV++ ++ + I+ +V N E D +E +NDA+KL+
Sbjct: 209 QKSSYTYRLRDLIKQSVELREDHGLIRKDILQLLVRFRNGNEVSGDKWQLEPINDADKLL 268
Query: 406 E--------EEMLKIKMEAGKSNISFTGLLLVR 332
E++LK+ ++A S ++FT L +++
Sbjct: 269 SIKRLAKVAEDLLKVSLDAVASTVTFTLLEILQ 301
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 583,187,380
Number of Sequences: 1393205
Number of extensions: 12397495
Number of successful extensions: 27671
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 26823
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 27654
length of database: 448,689,247
effective HSP length: 119
effective length of database: 282,897,852
effective search space used: 31684559424
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
