Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000789A_C01 KMC000789A_c01
(803 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAN65000.1| Putative adapter protein SPIKE1 [Oryza sativa (ja... 241 9e-63
ref|NP_193367.1| putative protein; protein id: At4g16340.1 [Arab... 236 2e-61
pir||A71430 hypothetical protein - Arabidopsis thaliana gi|22449... 236 2e-61
gb|AAL74193.1|AF465831_1 adapter protein SPIKE1 [Arabidopsis tha... 236 2e-61
gb|AAL92252.1|AC115585_10 similar to Homo sapiens (Human). KIAA1... 61 2e-08
>gb|AAN65000.1| Putative adapter protein SPIKE1 [Oryza sativa (japonica
cultivar-group)]
Length = 1852
Score = 241 bits (615), Expect = 9e-63
Identities = 125/126 (99%), Positives = 126/126 (99%)
Frame = -1
Query: 803 GMIETRTAALRNELEEPRSSEGDQLPRLQSLQRILQGSVAVQVNSGVLSVCTAFLSGEPA 624
GMIETRTAALRNELEEPRSSEGDQLPRLQSLQRILQGSVAVQVNSGVLSVCTAFLSGEPA
Sbjct: 1727 GMIETRTAALRNELEEPRSSEGDQLPRLQSLQRILQGSVAVQVNSGVLSVCTAFLSGEPA 1786
Query: 623 TRLRSQELQQLIAALLEFMAVCKRAIRVHFRLIGEEDQDFHTQLVNGFQSLTAELSHYIP 444
TRLRSQELQQLIAALLEFMAVCKRAIRVHFRLIGEEDQ+FHTQLVNGFQSLTAELSHYIP
Sbjct: 1787 TRLRSQELQQLIAALLEFMAVCKRAIRVHFRLIGEEDQEFHTQLVNGFQSLTAELSHYIP 1846
Query: 443 AILSEL 426
AILSEL
Sbjct: 1847 AILSEL 1852
>ref|NP_193367.1| putative protein; protein id: At4g16340.1 [Arabidopsis thaliana]
Length = 1120
Score = 236 bits (603), Expect = 2e-61
Identities = 122/126 (96%), Positives = 124/126 (97%)
Frame = -1
Query: 803 GMIETRTAALRNELEEPRSSEGDQLPRLQSLQRILQGSVAVQVNSGVLSVCTAFLSGEPA 624
GMIETRT ALRNELEEPRSS+GD LPRLQSLQRILQGSVAVQVNSGVLSVCTAFLSGEPA
Sbjct: 995 GMIETRTTALRNELEEPRSSDGDHLPRLQSLQRILQGSVAVQVNSGVLSVCTAFLSGEPA 1054
Query: 623 TRLRSQELQQLIAALLEFMAVCKRAIRVHFRLIGEEDQDFHTQLVNGFQSLTAELSHYIP 444
TRLRSQELQQLIAALLEFMAVCKRAIRVHFRLIGEEDQ+FHTQLVNGFQSLTAELSHYIP
Sbjct: 1055 TRLRSQELQQLIAALLEFMAVCKRAIRVHFRLIGEEDQEFHTQLVNGFQSLTAELSHYIP 1114
Query: 443 AILSEL 426
AILSEL
Sbjct: 1115 AILSEL 1120
>pir||A71430 hypothetical protein - Arabidopsis thaliana
gi|2244990|emb|CAB10411.1| putative protein [Arabidopsis
thaliana] gi|7268383|emb|CAB78676.1| putative protein
[Arabidopsis thaliana]
Length = 1105
Score = 236 bits (603), Expect = 2e-61
Identities = 122/126 (96%), Positives = 124/126 (97%)
Frame = -1
Query: 803 GMIETRTAALRNELEEPRSSEGDQLPRLQSLQRILQGSVAVQVNSGVLSVCTAFLSGEPA 624
GMIETRT ALRNELEEPRSS+GD LPRLQSLQRILQGSVAVQVNSGVLSVCTAFLSGEPA
Sbjct: 980 GMIETRTTALRNELEEPRSSDGDHLPRLQSLQRILQGSVAVQVNSGVLSVCTAFLSGEPA 1039
Query: 623 TRLRSQELQQLIAALLEFMAVCKRAIRVHFRLIGEEDQDFHTQLVNGFQSLTAELSHYIP 444
TRLRSQELQQLIAALLEFMAVCKRAIRVHFRLIGEEDQ+FHTQLVNGFQSLTAELSHYIP
Sbjct: 1040 TRLRSQELQQLIAALLEFMAVCKRAIRVHFRLIGEEDQEFHTQLVNGFQSLTAELSHYIP 1099
Query: 443 AILSEL 426
AILSEL
Sbjct: 1100 AILSEL 1105
>gb|AAL74193.1|AF465831_1 adapter protein SPIKE1 [Arabidopsis thaliana]
Length = 1830
Score = 236 bits (603), Expect = 2e-61
Identities = 122/126 (96%), Positives = 124/126 (97%)
Frame = -1
Query: 803 GMIETRTAALRNELEEPRSSEGDQLPRLQSLQRILQGSVAVQVNSGVLSVCTAFLSGEPA 624
GMIETRT ALRNELEEPRSS+GD LPRLQSLQRILQGSVAVQVNSGVLSVCTAFLSGEPA
Sbjct: 1705 GMIETRTTALRNELEEPRSSDGDHLPRLQSLQRILQGSVAVQVNSGVLSVCTAFLSGEPA 1764
Query: 623 TRLRSQELQQLIAALLEFMAVCKRAIRVHFRLIGEEDQDFHTQLVNGFQSLTAELSHYIP 444
TRLRSQELQQLIAALLEFMAVCKRAIRVHFRLIGEEDQ+FHTQLVNGFQSLTAELSHYIP
Sbjct: 1765 TRLRSQELQQLIAALLEFMAVCKRAIRVHFRLIGEEDQEFHTQLVNGFQSLTAELSHYIP 1824
Query: 443 AILSEL 426
AILSEL
Sbjct: 1825 AILSEL 1830
>gb|AAL92252.1|AC115585_10 similar to Homo sapiens (Human). KIAA1395 protein (Fragment)
[Dictyostelium discoideum]
Length = 2621
Score = 61.2 bits (147), Expect = 2e-08
Identities = 31/96 (32%), Positives = 51/96 (52%)
Frame = -1
Query: 728 PRLQSLQRILQGSVAVQVNSGVLSVCTAFLSGEPATRLRSQELQQLIAALLEFMAVCKRA 549
P +++LQ +LQGSV +QVN+G L +C FL+ + + ++ L F+ CKRA
Sbjct: 2397 PSIKTLQGVLQGSVLLQVNAGALEICRGFLANQMRVNWPAHHIETLAQECTIFLKHCKRA 2456
Query: 548 IRVHFRLIGEEDQDFHTQLVNGFQSLTAELSHYIPA 441
+ ++ I FH +L G+ L ++ YI A
Sbjct: 2457 LDINKNKIQMNQISFHQELELGYAKLYFKMDRYIRA 2492
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 680,313,532
Number of Sequences: 1393205
Number of extensions: 15039172
Number of successful extensions: 37717
Number of sequences better than 10.0: 73
Number of HSP's better than 10.0 without gapping: 36342
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 37690
length of database: 448,689,247
effective HSP length: 121
effective length of database: 280,111,442
effective search space used: 40896270532
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
