Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000781A_C02 KMC000781A_c02
(616 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_030524.1| S-like ribonuclease RNS2; protein id: At2g39780... 33 3.9
gb|EAA22486.1| hypothetical protein [Plasmodium yoelii yoelii] 32 5.1
dbj|BAA84468.1| RNase NGR2 [Nicotiana glutinosa] 32 6.6
>ref|NP_030524.1| S-like ribonuclease RNS2; protein id: At2g39780.1 [Arabidopsis
thaliana] gi|1173104|sp|P42814|RNS2_ARATH Ribonuclease 2
precursor gi|7435267|pir||T01008 ribonuclease (EC
3.1.27.-) S2 - Arabidopsis thaliana
gi|289210|gb|AAA51406.1| ribonuclease
gi|2642160|gb|AAB87127.1| S-like ribonuclease RNS2
[Arabidopsis thaliana]
Length = 259
Score = 32.7 bits (73), Expect = 3.9
Identities = 14/22 (63%), Positives = 16/22 (72%)
Frame = -1
Query: 583 DMVSIGSCPKYVSLPEHASLGG 518
D+ S SCPKYVSLPE+ L G
Sbjct: 224 DLTSRKSCPKYVSLPEYTPLDG 245
>gb|EAA22486.1| hypothetical protein [Plasmodium yoelii yoelii]
Length = 749
Score = 32.3 bits (72), Expect = 5.1
Identities = 21/72 (29%), Positives = 35/72 (48%)
Frame = +3
Query: 147 NSLVMQMYRNCL*YNIIYYTVILVHNFSNKETDKTSPQIHGSRLDISPK*YIQSSISSFF 326
N L+ Y + Y YY ++HN ++K+ + S ++ + I K I + I+SF
Sbjct: 242 NILLFLYYLSIKLYKSYYYHSSILHNITSKQILEASKYLN---IKIKKKQIIMNYITSFQ 298
Query: 327 RAKRYVINLSSN 362
K Y N+S N
Sbjct: 299 NYKSYKTNISMN 310
>dbj|BAA84468.1| RNase NGR2 [Nicotiana glutinosa]
Length = 277
Score = 32.0 bits (71), Expect = 6.6
Identities = 13/21 (61%), Positives = 16/21 (75%)
Frame = -1
Query: 589 NTDMVSIGSCPKYVSLPEHAS 527
+T +S GSCP+YVSLP H S
Sbjct: 244 DTSALSRGSCPQYVSLPAHGS 264
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 530,316,654
Number of Sequences: 1393205
Number of extensions: 10989195
Number of successful extensions: 22488
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 22010
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22486
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 24854530794
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
