Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000779A_C01 KMC000779A_c01
(585 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
sp|P46277|CG1B_MEDVA G2/mitotic-specific cyclin 1 (B-like cyclin... 88 3e-28
sp|P30286|CG1B_MEDSA G2/mitotic-specific cyclin 1 (B-like cyclin... 88 3e-28
pir||S56679 mitosis-specific cyclin CycIII - alfalfa gi|780267|e... 87 1e-27
sp|P46278|CG2B_MEDVA G2/mitotic-specific cyclin 2 (B-like cyclin... 69 3e-19
sp|P30278|CG2B_MEDSA G2/mitotic-specific cyclin 2 (B-like cyclin... 59 2e-16
>sp|P46277|CG1B_MEDVA G2/mitotic-specific cyclin 1 (B-like cyclin) (CYCMS1)
gi|914861|emb|CAA57559.1| cycMs1 [Medicago sativa subsp.
x varia]
Length = 428
Score = 88.2 bits (217), Expect(2) = 3e-28
Identities = 47/75 (62%), Positives = 59/75 (78%), Gaps = 3/75 (4%)
Frame = -1
Query: 582 RFAANIASSTQPSQAEETQKSNLTVANSNGFGEYIFVDDELKP-EDQPVPMSLEPT--VH 412
RFAA IAS+ + T++SNL ++SNGFG++IFVDDE KP EDQPVPM+LE T +H
Sbjct: 77 RFAAKIASTKTSNAEGTTKRSNLAKSSSNGFGDFIFVDDEHKPVEDQPVPMALEQTEPMH 136
Query: 411 SESDPMEELEMEDII 367
SESD MEE+EMEDI+
Sbjct: 137 SESDQMEEVEMEDIM 151
Score = 58.5 bits (140), Expect(2) = 3e-28
Identities = 26/38 (68%), Positives = 32/38 (83%)
Frame = -2
Query: 356 EEPIVDIDVGDANNPLAVTDYIEGLYSYYRKIESINPV 243
EEP++DID DAN+PLAV +YIE LYSYYRK+ES + V
Sbjct: 152 EEPVMDIDTPDANDPLAVAEYIEDLYSYYRKVESTSCV 189
>sp|P30286|CG1B_MEDSA G2/mitotic-specific cyclin 1 (B-like cyclin) (CycMs1)
gi|322705|pir||S29924 cyclin 1 - alfalfa (fragment)
gi|19597|emb|CAA48674.1| cyclin [Medicago sativa]
Length = 213
Score = 88.2 bits (217), Expect(2) = 3e-28
Identities = 47/75 (62%), Positives = 59/75 (78%), Gaps = 3/75 (4%)
Frame = -1
Query: 582 RFAANIASSTQPSQAEETQKSNLTVANSNGFGEYIFVDDELKP-EDQPVPMSLEPT--VH 412
RFAA IAS+ + T++SNL ++SNGFG++IFVDDE KP EDQPVPM+LE T +H
Sbjct: 77 RFAAKIASTKTSNAEGTTKRSNLAKSSSNGFGDFIFVDDEHKPVEDQPVPMALEQTEPMH 136
Query: 411 SESDPMEELEMEDII 367
SESD MEE+EMEDI+
Sbjct: 137 SESDQMEEVEMEDIM 151
Score = 58.5 bits (140), Expect(2) = 3e-28
Identities = 26/38 (68%), Positives = 32/38 (83%)
Frame = -2
Query: 356 EEPIVDIDVGDANNPLAVTDYIEGLYSYYRKIESINPV 243
EEP++DID DAN+PLAV +YIE LYSYYRK+ES + V
Sbjct: 152 EEPVMDIDTPDANDPLAVAEYIEDLYSYYRKVESTSCV 189
>pir||S56679 mitosis-specific cyclin CycIII - alfalfa gi|780267|emb|CAA55272.1|
B-like cyclin [Medicago sativa]
Length = 428
Score = 86.7 bits (213), Expect(2) = 1e-27
Identities = 46/75 (61%), Positives = 59/75 (78%), Gaps = 3/75 (4%)
Frame = -1
Query: 582 RFAANIASSTQPSQAEETQKSNLTVANSNGFGEYIFVDDELKP-EDQPVPMSLEPT--VH 412
RFAA IA++ + T++SNL ++SNGFG++IFVDDE KP EDQPVPM+LE T +H
Sbjct: 77 RFAAKIANTKTTNAEGTTKRSNLAKSSSNGFGDFIFVDDEHKPVEDQPVPMALEQTEPMH 136
Query: 411 SESDPMEELEMEDII 367
SESD MEE+EMEDI+
Sbjct: 137 SESDRMEEVEMEDIM 151
Score = 58.5 bits (140), Expect(2) = 1e-27
Identities = 26/38 (68%), Positives = 32/38 (83%)
Frame = -2
Query: 356 EEPIVDIDVGDANNPLAVTDYIEGLYSYYRKIESINPV 243
EEP++DID DAN+PLAV +YIE LYSYYRK+ES + V
Sbjct: 152 EEPVMDIDTPDANDPLAVAEYIEDLYSYYRKVESTSCV 189
>sp|P46278|CG2B_MEDVA G2/mitotic-specific cyclin 2 (B-like cyclin) (CYCMS2)
gi|7438515|pir||T09706 cyclin cycMs2, B-type - alfalfa
gi|914863|emb|CAA57560.1| cycMs2 [Medicago sativa subsp.
x varia]
Length = 434
Score = 68.6 bits (166), Expect(2) = 3e-19
Identities = 45/74 (60%), Positives = 50/74 (66%), Gaps = 3/74 (4%)
Frame = -1
Query: 582 RFAANIASSTQPSQAEETQKSNLTVANSNGFGEYIFVDDELK-PEDQPVPMSLEPTVHSE 406
RFAA IA S Q S AE+T+ SN N N FG I +DDELK PEDQP PM+LE T
Sbjct: 84 RFAAKIAGSQQ-SYAEKTKNSN--PLNLNEFGNSIAIDDELKSPEDQPEPMTLEHTEPMH 140
Query: 405 SDP--MEELEMEDI 370
SDP MEE+EMEDI
Sbjct: 141 SDPLEMEEVEMEDI 154
Score = 48.1 bits (113), Expect(2) = 3e-19
Identities = 25/44 (56%), Positives = 31/44 (69%), Gaps = 3/44 (6%)
Frame = -2
Query: 353 EPIVDIDVGDANNPLAVTDYIEGLYSYYRKIE---SINPVKYDE 231
E I+DID DANN LAV +YIE L++YYRKIE ++P DE
Sbjct: 157 EMILDIDSCDANNSLAVVEYIEDLHAYYRKIEYLGCVSPTYMDE 200
>sp|P30278|CG2B_MEDSA G2/mitotic-specific cyclin 2 (B-like cyclin) (CycMs2)
gi|322706|pir||S29925 cyclin 2 - alfalfa (fragment)
gi|19599|emb|CAA48675.1| cyclin [Medicago sativa]
Length = 328
Score = 58.9 bits (141), Expect(2) = 2e-16
Identities = 32/48 (66%), Positives = 36/48 (74%), Gaps = 3/48 (6%)
Frame = -1
Query: 504 NSNGFGEYIFVDDELK-PEDQPVPMSLEPTVHSESDP--MEELEMEDI 370
NSN FG +I +DDELK PEDQP PM+LE T SDP MEE+EMEDI
Sbjct: 1 NSNEFGNFIAIDDELKLPEDQPEPMTLEHTEPMHSDPLEMEEVEMEDI 48
Score = 48.1 bits (113), Expect(2) = 2e-16
Identities = 25/44 (56%), Positives = 31/44 (69%), Gaps = 3/44 (6%)
Frame = -2
Query: 353 EPIVDIDVGDANNPLAVTDYIEGLYSYYRKIE---SINPVKYDE 231
E I+DID DANN LAV +YIE L++YYRKIE ++P DE
Sbjct: 51 EMILDIDSCDANNSLAVVEYIEDLHAYYRKIEYLGCVSPTYMDE 94
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 495,516,996
Number of Sequences: 1393205
Number of extensions: 10518890
Number of successful extensions: 31178
Number of sequences better than 10.0: 163
Number of HSP's better than 10.0 without gapping: 29903
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 31146
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 21997688174
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
