Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000776A_C01 KMC000776A_c01
(644 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_195948.1| putative protein; protein id: At5g03280.1, supp... 94 1e-18
gb|AAL83627.1|AC093017_11 putative manganese transport protein [... 84 2e-15
pir||B37361 hypothetical protein (pcx region) - fruit fly (Droso... 39 0.078
sp|P18490|PCX_DROME PECANEX PROTEIN gi|158040|gb|AAA28747.1| pcx 39 0.078
pir||A37361 probable integral membrane protein pecanex - fruit f... 39 0.078
>ref|NP_195948.1| putative protein; protein id: At5g03280.1, supported by cDNA:
gi_5231114 [Arabidopsis thaliana] gi|11357278|pir||T48349
EIN2 protein - Arabidopsis thaliana
gi|5231113|gb|AAD41076.1|AF141202_1 EIN2 [Arabidopsis
thaliana] gi|5231115|gb|AAD41077.1|AF141203_1 EIN2
[Arabidopsis thaliana] gi|7378608|emb|CAB83284.1| EIN2
[Arabidopsis thaliana] gi|9757779|dbj|BAB08388.1| EIN2
[Arabidopsis thaliana]
Length = 1294
Score = 94.4 bits (233), Expect = 1e-18
Identities = 48/65 (73%), Positives = 56/65 (85%), Gaps = 3/65 (4%)
Frame = -2
Query: 643 LDMVKDVEIAISSRKGRTGTAAGDVAFPMGKENMASVLKRYKRRLPNKPVGTHE---GTR 473
LD++KDVE+AIS RKGRTGTAAGDVAFP GKEN+ASVLKRYKRRL NKPVG ++ G+R
Sbjct: 1225 LDLIKDVEMAISCRKGRTGTAAGDVAFPKGKENLASVLKRYKRRLSNKPVGMNQDGPGSR 1284
Query: 472 KIPTS 458
K T+
Sbjct: 1285 KNVTA 1289
>gb|AAL83627.1|AC093017_11 putative manganese transport protein [Oryza sativa (japonica
cultivar-group)]
Length = 1202
Score = 84.0 bits (206), Expect = 2e-15
Identities = 41/48 (85%), Positives = 45/48 (93%)
Frame = -2
Query: 643 LDMVKDVEIAISSRKGRTGTAAGDVAFPMGKENMASVLKRYKRRLPNK 500
L+M+KDVE AISSRKGR+GTAAGDVAFP GKEN+ASVLKRYKRRL NK
Sbjct: 1150 LEMIKDVEQAISSRKGRSGTAAGDVAFPKGKENLASVLKRYKRRLSNK 1197
>pir||B37361 hypothetical protein (pcx region) - fruit fly (Drosophila
melanogaster) (clone E61) (fragment)
Length = 289
Score = 38.5 bits (88), Expect = 0.078
Identities = 17/41 (41%), Positives = 25/41 (60%)
Frame = +3
Query: 51 KKIQATITMGLKNTQIINMLTSLGGLNGHCQTTFTLFKPHL 173
+K+QAT+T LKN ++ L ++ L HC T FT +P L
Sbjct: 95 RKLQATVTTRLKNDLVVMTLLAVSVLGLHCSTVFTALQPDL 135
>sp|P18490|PCX_DROME PECANEX PROTEIN gi|158040|gb|AAA28747.1| pcx
Length = 2483
Score = 38.5 bits (88), Expect = 0.078
Identities = 17/41 (41%), Positives = 25/41 (60%)
Frame = +3
Query: 51 KKIQATITMGLKNTQIINMLTSLGGLNGHCQTTFTLFKPHL 173
+K+QAT+T LKN ++ L ++ L HC T FT +P L
Sbjct: 1362 RKLQATVTTRLKNDLVVMTLLAVSVLGLHCSTVFTALQPDL 1402
>pir||A37361 probable integral membrane protein pecanex - fruit fly (Drosophila
melanogaster) (fragment) gi|158044|gb|AAA28749.1|
pecanex
Length = 1938
Score = 38.5 bits (88), Expect = 0.078
Identities = 17/41 (41%), Positives = 25/41 (60%)
Frame = +3
Query: 51 KKIQATITMGLKNTQIINMLTSLGGLNGHCQTTFTLFKPHL 173
+K+QAT+T LKN ++ L ++ L HC T FT +P L
Sbjct: 817 RKLQATVTTRLKNDLVVMTLLAVSVLGLHCSTVFTALQPDL 857
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 586,424,120
Number of Sequences: 1393205
Number of extensions: 13045586
Number of successful extensions: 36328
Number of sequences better than 10.0: 31
Number of HSP's better than 10.0 without gapping: 34675
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 36326
length of database: 448,689,247
effective HSP length: 118
effective length of database: 284,291,057
effective search space used: 27291941472
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
