Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000775A_C01 KMC000775A_c01
(521 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAB11329.1| kinesin-like protein [Arabidopsis thaliana] 42 0.006
ref|NP_199593.2| kinesin-related protein; protein id: At5g47820.... 42 0.006
ref|NP_566931.1| kinesin-related protein; protein id: At3g50240.... 33 2.0
pir||T45570 kinesin-like protein - Arabidopsis thaliana gi|65230... 33 2.0
ref|NP_701588.1| hypothetical protein [Plasmodium falciparum 3D7... 32 4.5
>dbj|BAB11329.1| kinesin-like protein [Arabidopsis thaliana]
Length = 1032
Score = 41.6 bits (96), Expect = 0.006
Identities = 16/28 (57%), Positives = 22/28 (78%)
Frame = -3
Query: 519 KPWKLSEWIXHXDETIMRSRPXTRALIN 436
KPW+LSEWI DET+++S+P +AL N
Sbjct: 1002 KPWRLSEWIRTSDETLLKSKPRLKALPN 1029
>ref|NP_199593.2| kinesin-related protein; protein id: At5g47820.1 [Arabidopsis
thaliana] gi|27260890|gb|AAN86114.1| kinesin-like protein
[Arabidopsis thaliana] gi|27260892|gb|AAN86115.1|
kinesin-like protein [Arabidopsis thaliana]
Length = 1035
Score = 41.6 bits (96), Expect = 0.006
Identities = 16/28 (57%), Positives = 22/28 (78%)
Frame = -3
Query: 519 KPWKLSEWIXHXDETIMRSRPXTRALIN 436
KPW+LSEWI DET+++S+P +AL N
Sbjct: 1005 KPWRLSEWIRTSDETLLKSKPRLKALPN 1032
>ref|NP_566931.1| kinesin-related protein; protein id: At3g50240.1, supported by cDNA:
gi_14041828 [Arabidopsis thaliana]
gi|14041829|dbj|BAB55445.1| kinesin-related protein
[Arabidopsis thaliana]
Length = 1051
Score = 33.1 bits (74), Expect = 2.0
Identities = 13/17 (76%), Positives = 13/17 (76%)
Frame = -3
Query: 519 KPWKLSEWIXHXDETIM 469
KPWKLSEWI DET M
Sbjct: 1010 KPWKLSEWIKQNDETTM 1026
>pir||T45570 kinesin-like protein - Arabidopsis thaliana
gi|6523035|emb|CAB62303.1| kinesin-like protein
[Arabidopsis thaliana]
Length = 1075
Score = 33.1 bits (74), Expect = 2.0
Identities = 13/17 (76%), Positives = 13/17 (76%)
Frame = -3
Query: 519 KPWKLSEWIXHXDETIM 469
KPWKLSEWI DET M
Sbjct: 1034 KPWKLSEWIKQNDETTM 1050
>ref|NP_701588.1| hypothetical protein [Plasmodium falciparum 3D7]
gi|23496757|gb|AAN36312.1|AE014847_39 hypothetical
protein [Plasmodium falciparum 3D7]
Length = 4494
Score = 32.0 bits (71), Expect = 4.5
Identities = 15/48 (31%), Positives = 25/48 (51%), Gaps = 1/48 (2%)
Frame = +2
Query: 2 VHNQFQEVLHLYK*QIFTLYRYNLQNWLKKTTE-LTWNSFITNNILVY 142
+HN F YK IF +Y+Y W+K T + + N F N ++++
Sbjct: 2684 LHNLFYSYKQKYKINIFDIYKY-FMKWIKNTKDIINTNEFDINKMIIF 2730
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 415,946,152
Number of Sequences: 1393205
Number of extensions: 8357813
Number of successful extensions: 21999
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 21359
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21989
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 16731298976
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
