Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000771A_C01 KMC000771A_c01
(638 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_566607.1| expressed protein; protein id: At3g18370.1, sup... 44 0.001
gb|AAL56441.1| similar to transmembrane receptor [Oikopleura dio... 34 1.4
ref|NP_624074.1| spore germination protein homolog yndE [Thermoa... 34 1.4
pir||S60529 envelope polyprotein gp41 - human immunodeficiency v... 34 1.9
gb|EAA20778.1| Drosophila melanogaster BcDNA.GH06032 [Plasmodium... 33 3.2
>ref|NP_566607.1| expressed protein; protein id: At3g18370.1, supported by cDNA:
gi_15983786 [Arabidopsis thaliana]
gi|15983787|gb|AAL10490.1| AT3g18370/MYF24_8
[Arabidopsis thaliana] gi|22137024|gb|AAM91357.1|
At3g18370/MYF24_8 [Arabidopsis thaliana]
Length = 815
Score = 44.3 bits (103), Expect = 0.001
Identities = 19/34 (55%), Positives = 30/34 (87%)
Frame = -2
Query: 637 QEGYIVQLETEXMLLLSQIKELXQEIINSSPSQS 536
QE Y++QL+TE LL+++IK+L +EI+NSSP+Q+
Sbjct: 777 QEQYLLQLQTEQSLLINKIKDLGKEILNSSPAQA 810
>gb|AAL56441.1| similar to transmembrane receptor [Oikopleura dioica]
Length = 1756
Score = 34.3 bits (77), Expect = 1.4
Identities = 21/56 (37%), Positives = 28/56 (49%), Gaps = 1/56 (1%)
Frame = -1
Query: 335 KNAYLTLKCRMKKMENAYCTLKCGTH-RDGIKMCGDGINNNHAFFLSIVKLLSGRG 171
KNAYL C + + ++C GT GI C G N+N F SIVK++ G
Sbjct: 1261 KNAYLDATCELDLQDTSFCNN--GTEFLTGIDACRTGENSNDIFGDSIVKIVEAYG 1314
>ref|NP_624074.1| spore germination protein homolog yndE [Thermoanaerobacter
tengcongensis] gi|20517562|gb|AAM25678.1| spore
germination protein homolog yndE [Thermoanaerobacter
tengcongensis]
Length = 365
Score = 34.3 bits (77), Expect = 1.4
Identities = 34/105 (32%), Positives = 49/105 (46%), Gaps = 10/105 (9%)
Frame = +1
Query: 73 NINF--IFFPHGESRVNLISTTSVNTANLSFNYAIPLPESNFTIERKKAWLLL--IPSPH 240
+INF F + E V I T ++ T+ SF+Y L S R+ ++L+L IP +
Sbjct: 258 SINFPVFFIENVEGIVMAIWTFTIFTSIYSFHYFAVLVLSKLIKAREHSYLVLPLIPPMY 317
Query: 241 I--LIPSLCVPHFK----VQYAFSIFFIRHFKVRYAFFFPWNSMG 357
+ LIP V +K V SIFFI + AFF +G
Sbjct: 318 LMALIPDSIVTLYKYANLVSQYLSIFFISFLPIILAFFVKLKGLG 362
>pir||S60529 envelope polyprotein gp41 - human immunodeficiency virus type 1
(isolate CI-14-13) (fragment) gi|468638|emb|CAA50914.1|
gp160 [Human immunodeficiency virus 1]
Length = 299
Score = 33.9 bits (76), Expect = 1.9
Identities = 19/63 (30%), Positives = 32/63 (50%), Gaps = 13/63 (20%)
Frame = -1
Query: 365 NTIPIEFHGKKNAYLTLKCRMKKMENAY-------------CTLKCGTHRDGIKMCGDGI 225
NTI H + N+ +TL+CR+K++ N + ++C ++ GI + DG
Sbjct: 129 NTITSANHTESNSTITLQCRIKQIVNMWQGVGQAMYAPPIKGVIRCNSNITGILLTRDGG 188
Query: 224 NNN 216
NNN
Sbjct: 189 NNN 191
>gb|EAA20778.1| Drosophila melanogaster BcDNA.GH06032 [Plasmodium yoelii yoelii]
Length = 1682
Score = 33.1 bits (74), Expect = 3.2
Identities = 16/47 (34%), Positives = 22/47 (46%)
Frame = -1
Query: 338 KKNAYLTLKCRMKKMENAYCTLKCGTHRDGIKMCGDGINNNHAFFLS 198
+KN +L L C MK ++N Y G + DG N FF+S
Sbjct: 840 EKNIFLKLNCNMKSIDNIYVRSSSYVSNGGNDITSDGGNKFSEFFIS 886
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 575,692,771
Number of Sequences: 1393205
Number of extensions: 12977020
Number of successful extensions: 25906
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 24854
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25865
length of database: 448,689,247
effective HSP length: 118
effective length of database: 284,291,057
effective search space used: 26723359358
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
