Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000770A_C01 KMC000770A_c01
(584 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_200235.1| putative protein; protein id: At5g54240.1 [Arab... 56 4e-07
gb|AAO42244.1| unknown protein [Arabidopsis thaliana] 56 4e-07
gb|AAM65012.1| unknown [Arabidopsis thaliana] 55 5e-07
ref|NP_194465.1| putative protein; protein id: At4g27350.1, supp... 55 5e-07
gb|AAG40031.2|AF324680_1 AT4g27350 [Arabidopsis thaliana] 54 1e-06
>ref|NP_200235.1| putative protein; protein id: At5g54240.1 [Arabidopsis thaliana]
gi|9759497|dbj|BAB10747.1|
gene_id:MDK4.6~pir||T05759~strong similarity to unknown
protein [Arabidopsis thaliana]
Length = 282
Score = 55.8 bits (133), Expect = 4e-07
Identities = 28/45 (62%), Positives = 31/45 (68%)
Frame = -2
Query: 313 RKLEKICTAKGIPAKKIVSRTIDFHLLKGFNSRKCVVAVFLQNQS 179
RKLEK+CT K + KK VS T F + GFNS KC VAVFLQN S
Sbjct: 223 RKLEKLCTVKDLTGKKTVSGTAHFTVWDGFNSSKCGVAVFLQNTS 267
>gb|AAO42244.1| unknown protein [Arabidopsis thaliana]
Length = 73
Score = 55.8 bits (133), Expect = 4e-07
Identities = 28/45 (62%), Positives = 31/45 (68%)
Frame = -2
Query: 313 RKLEKICTAKGIPAKKIVSRTIDFHLLKGFNSRKCVVAVFLQNQS 179
RKLEK+CT K + KK VS T F + GFNS KC VAVFLQN S
Sbjct: 14 RKLEKLCTVKDLTGKKTVSGTAHFTVWDGFNSSKCGVAVFLQNTS 58
>gb|AAM65012.1| unknown [Arabidopsis thaliana]
Length = 278
Score = 55.5 bits (132), Expect = 5e-07
Identities = 28/45 (62%), Positives = 31/45 (68%)
Frame = -2
Query: 313 RKLEKICTAKGIPAKKIVSRTIDFHLLKGFNSRKCVVAVFLQNQS 179
RK+EK+CT K + KK VS T F L GFNS KC VAVFLQN S
Sbjct: 219 RKMEKMCTVKDVAPKKPVSGTAHFTLWDGFNSSKCGVAVFLQNSS 263
>ref|NP_194465.1| putative protein; protein id: At4g27350.1, supported by cDNA:
35749., supported by cDNA: gi_12597468, supported by
cDNA: gi_13265462, supported by cDNA: gi_21281146
[Arabidopsis thaliana] gi|7460217|pir||T05759
hypothetical protein M4I22.160 - Arabidopsis thaliana
gi|3269296|emb|CAA19729.1| putative protein [Arabidopsis
thaliana] gi|7269588|emb|CAB79590.1| putative protein
[Arabidopsis thaliana]
gi|12597469|gb|AAG60063.1|AF337911_1 unknown protein
[Arabidopsis thaliana] gi|21281147|gb|AAM44923.1|
membrane lipoprotein lipid attachment site-containing
unknown protein [Arabidopsis thaliana]
Length = 278
Score = 55.5 bits (132), Expect = 5e-07
Identities = 28/45 (62%), Positives = 31/45 (68%)
Frame = -2
Query: 313 RKLEKICTAKGIPAKKIVSRTIDFHLLKGFNSRKCVVAVFLQNQS 179
RK+EK+CT K + KK VS T F L GFNS KC VAVFLQN S
Sbjct: 219 RKMEKMCTVKDVAPKKPVSGTAHFTLWDGFNSSKCGVAVFLQNSS 263
>gb|AAG40031.2|AF324680_1 AT4g27350 [Arabidopsis thaliana]
Length = 278
Score = 53.9 bits (128), Expect = 1e-06
Identities = 27/45 (60%), Positives = 30/45 (66%)
Frame = -2
Query: 313 RKLEKICTAKGIPAKKIVSRTIDFHLLKGFNSRKCVVAVFLQNQS 179
RK+EK+CT K + KK VS T F L GFNS KC VAVF QN S
Sbjct: 219 RKMEKMCTVKDVAPKKPVSGTAHFTLWDGFNSSKCGVAVFFQNSS 263
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 496,595,886
Number of Sequences: 1393205
Number of extensions: 10123040
Number of successful extensions: 18946
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 18567
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18946
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 21997688174
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
