Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000769A_C01 KMC000769A_c01
(583 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAB85495.1| Tiarin [Xenopus laevis] 32 5.8
pir||JC7633 aryl hydrocarbon nuclear translocator ARNT2-like fac... 31 9.9
>dbj|BAB85495.1| Tiarin [Xenopus laevis]
Length = 467
Score = 32.0 bits (71), Expect = 5.8
Identities = 28/86 (32%), Positives = 42/86 (48%), Gaps = 1/86 (1%)
Frame = +1
Query: 289 DESKLWLLYSCKQSW*SGSLLYNFPSSW*LSISI*ICKIKTTKRYKNWCTTEY*NLMQNC 468
DE LW++YS +Q+ SG+++ + +S L++ K TT +YK T N C
Sbjct: 343 DEDGLWVIYSTEQN--SGNIVISKLNSTTLTVE----KTWTTSQYKLGAT----NAFMVC 392
Query: 469 KSL-GLSNQSQRIIIVFYSHKTNTNK 543
L S R +FY + T TNK
Sbjct: 393 GVLYATRTLSTRKEEIFYMYDTKTNK 418
>pir||JC7633 aryl hydrocarbon nuclear translocator ARNT2-like factor, ARNT2X -
zebra fish gi|13569831|gb|AAG16635.1| bHLH-PAS factor
ARNT2B [Danio rerio]
Length = 392
Score = 31.2 bits (69), Expect = 9.9
Identities = 15/37 (40%), Positives = 22/37 (58%), Gaps = 1/37 (2%)
Frame = -2
Query: 465 ILHQILVF-CSTPIFVPFGCFYFTDSYTDTQLPGGRK 358
IL I+ F STP VP+ + +D Y D Q+PG ++
Sbjct: 7 ILASIINFRASTPAHVPYIALFLSDRYDDDQIPGDKE 43
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 469,709,916
Number of Sequences: 1393205
Number of extensions: 10018750
Number of successful extensions: 21706
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 20979
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21686
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 21712003912
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
