Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000766A_C01 KMC000766A_c01
(530 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|EAA29226.1| predicted protein [Neurospora crassa] 33 2.1
sp|P35826|SLAP_BACTI S-LAYER PROTEIN PRECURSOR (SURFACE LAYER PR... 31 8.0
>gb|EAA29226.1| predicted protein [Neurospora crassa]
Length = 554
Score = 33.1 bits (74), Expect = 2.1
Identities = 17/53 (32%), Positives = 32/53 (60%)
Frame = +3
Query: 147 LLLSVLYLNLIILSCLLLI*NCRERDSRSCRDLVSMIVNDASLSHYPFSKLSL 305
++L +L+ +L++L C L+ C R + CR+L S SL+++P + L+L
Sbjct: 163 VVLFILF-SLLVLCCALIHSKCCTRPRQPCRELTSNAAKLGSLAYWPMAWLTL 214
>sp|P35826|SLAP_BACTI S-LAYER PROTEIN PRECURSOR (SURFACE LAYER PROTEIN)
gi|98538|pir||S16846 surface layer 45.4K protein -
Bacillus thuringiensis gi|40338|emb|CAA44000.1| surface
layer protein [Bacillus thuringiensis]
Length = 393
Score = 31.2 bits (69), Expect = 8.0
Identities = 13/45 (28%), Positives = 25/45 (54%)
Frame = -1
Query: 143 VWFSWNMQRFFILFYSSITHSLFIVF*FQLFQFKKNSTFLYYFIF 9
+ F++ +RFFIL ++ + + FQ+ FK + +F+ F F
Sbjct: 333 ILFNFKRERFFILIHNLLVQQFLYMCIFQMVHFKFSDSFIVCFSF 377
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 419,381,905
Number of Sequences: 1393205
Number of extensions: 8737581
Number of successful extensions: 22045
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 20768
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21895
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 17596710992
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
