Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000761A_C01 KMC000761A_c01
(503 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAA50542.1| multigene family 530 protein 31 7.0
ref|XP_230392.1| similar to olfactory receptor MOR248-2 [Mus mus... 31 7.0
gb|AAK92097.1|AF361947_1 SgcA [Dictyostelium discoideum] 31 7.0
gb|AAM34313.2| similar to Dictyostelium discoideum (Slime mold).... 31 7.0
ref|NP_196025.1| maturase -like protein; protein id: At5g04050.1... 31 9.1
>gb|AAA50542.1| multigene family 530 protein
Length = 278
Score = 31.2 bits (69), Expect = 7.0
Identities = 23/72 (31%), Positives = 36/72 (49%), Gaps = 8/72 (11%)
Frame = -1
Query: 482 HALVHELMTWEHAYSSIF--YSYCAQRIGEGCYVCRKRDLASPVLHIIGHLGVGIFK--- 318
HA++H+++ YS + YC Q + E + KR + V+ I G LGVG FK
Sbjct: 138 HAVIHDMLPILQKYSDYLDGWQYCNQILFE---LACKRQKYNMVVWIEGVLGVGNFKILF 194
Query: 317 ---VSNMDTSLF 291
++N D L+
Sbjct: 195 TIAINNRDLQLY 206
>ref|XP_230392.1| similar to olfactory receptor MOR248-2 [Mus musculus] [Rattus
norvegicus]
Length = 147
Score = 31.2 bits (69), Expect = 7.0
Identities = 11/42 (26%), Positives = 22/42 (52%)
Frame = -1
Query: 461 MTWEHAYSSIFYSYCAQRIGEGCYVCRKRDLASPVLHIIGHL 336
+TW + + ++FYS + Y R +D+ + V +I H+
Sbjct: 100 ITWVNKFLTVFYSVITPLLNPAIYTLRNKDIKNAVKKLINHM 141
>gb|AAK92097.1|AF361947_1 SgcA [Dictyostelium discoideum]
Length = 2843
Score = 31.2 bits (69), Expect = 7.0
Identities = 24/73 (32%), Positives = 34/73 (45%)
Frame = +3
Query: 240 TPWGKRLKTSKTLTSPKK*GSVHV*NFEYPHSQVSNNMQNWTC*ISLSTYITSFPYPLGT 419
TP G +KT SP GS P S +SNN N + S S+ +S +GT
Sbjct: 545 TPRGNPSSVNKTTASPTNSGSTTPLTQSPPLSPISNNNNNQSSPTSPSS--SSSTPKIGT 602
Query: 420 ITIEYRRVCMLPS 458
+ IE + ++PS
Sbjct: 603 LYIEQAKNVIIPS 615
>gb|AAM34313.2| similar to Dictyostelium discoideum (Slime mold). SgcA
Length = 656
Score = 31.2 bits (69), Expect = 7.0
Identities = 24/73 (32%), Positives = 34/73 (45%)
Frame = +3
Query: 240 TPWGKRLKTSKTLTSPKK*GSVHV*NFEYPHSQVSNNMQNWTC*ISLSTYITSFPYPLGT 419
TP G +KT SP GS P S +SNN N + S S+ +S +GT
Sbjct: 545 TPRGNPSSVNKTTASPTNSGSTTPLTQSPPLSPISNNNNNQSSPTSPSS--SSSTPKIGT 602
Query: 420 ITIEYRRVCMLPS 458
+ IE + ++PS
Sbjct: 603 LYIEQAKNVIIPS 615
>ref|NP_196025.1| maturase -like protein; protein id: At5g04050.1 [Arabidopsis
thaliana] gi|11358503|pir||T48432 maturase-like protein
- Arabidopsis thaliana gi|7406415|emb|CAB85525.1|
maturase-like protein [Arabidopsis thaliana]
Length = 696
Score = 30.8 bits (68), Expect = 9.1
Identities = 17/61 (27%), Positives = 24/61 (38%)
Frame = +1
Query: 157 EIESGTSLWSTLYTLSSLPDLACFHYAKPLGVKD*KHLKHSHHPKNKEVSMFETLNIPTP 336
E++S W + HY K L V D + +H P +EV M N+ P
Sbjct: 537 ELDSDIIKWYARHEKHGSTKKLIRHYTKDLRVSDLDGREEAHFPSEREVKMMGDKNLSDP 596
Query: 337 K 339
K
Sbjct: 597 K 597
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 459,969,682
Number of Sequences: 1393205
Number of extensions: 10467189
Number of successful extensions: 20899
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 20461
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20891
length of database: 448,689,247
effective HSP length: 114
effective length of database: 289,863,877
effective search space used: 15362785481
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
