Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000755A_C01 KMC000755A_c01
(597 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_195462.1| putative protein; protein id: At4g37460.1 [Arab... 102 5e-21
dbj|BAC16165.1| hypothetical protein~similar to Arabidopsis thal... 85 6e-16
gb|AAO51695.1| similar to Oryza sativa (japonica cultivar-group)... 45 7e-04
dbj|BAC11700.1| unnamed protein product [Homo sapiens] 42 0.008
ref|NP_078801.1| hypothetical protein FLJ22584 [Homo sapiens] gi... 42 0.008
>ref|NP_195462.1| putative protein; protein id: At4g37460.1 [Arabidopsis thaliana]
gi|7486501|pir||T04740 hypothetical protein F6G17.110 -
Arabidopsis thaliana gi|4468812|emb|CAB38213.1| putative
protein [Arabidopsis thaliana] gi|7270728|emb|CAB80411.1|
putative protein [Arabidopsis thaliana]
Length = 1013
Score = 102 bits (253), Expect = 5e-21
Identities = 44/69 (63%), Positives = 61/69 (87%)
Frame = -3
Query: 595 MEFTGSIPQGFQVDWEAILNMDLNSFMNSVKSWLYPSLKVTTSWKDYPDIASTFTTTGSV 416
MEFT +IP+G Q+DWEAILN++ SF++SVKSWLYPSLK+ TSW+D+ +I+S F+TTG+V
Sbjct: 945 MEFTETIPKGLQIDWEAILNVEPGSFVDSVKSWLYPSLKINTSWRDHTEISSAFSTTGAV 1004
Query: 415 IAALSSSDD 389
+AALS+ +D
Sbjct: 1005 VAALSTYND 1013
>dbj|BAC16165.1| hypothetical protein~similar to Arabidopsis thaliana chromosome4,
At4g37460 [Oryza sativa (japonica cultivar-group)]
gi|24414057|dbj|BAC22306.1| hypothetical protein~similar
to Arabidopsis thaliana chromosome4, At4g37460 [Oryza
sativa (japonica cultivar-group)]
Length = 1022
Score = 85.1 bits (209), Expect = 6e-16
Identities = 37/68 (54%), Positives = 52/68 (76%)
Frame = -3
Query: 595 MEFTGSIPQGFQVDWEAILNMDLNSFMNSVKSWLYPSLKVTTSWKDYPDIASTFTTTGSV 416
M+ T SIP G QVDWEAIL+ D ++F++ +K WLYPS+K + + KDY D++ F+TTGSV
Sbjct: 954 MDVTASIPHGVQVDWEAILSQDPDTFVDKIKPWLYPSIKTSRNLKDYADVSVAFSTTGSV 1013
Query: 415 IAALSSSD 392
+AAL+ D
Sbjct: 1014 VAALTCVD 1021
>gb|AAO51695.1| similar to Oryza sativa (japonica cultivar-group). OJ1513_F02.22
protein [Dictyostelium discoideum]
Length = 1050
Score = 45.1 bits (105), Expect = 7e-04
Identities = 24/65 (36%), Positives = 38/65 (57%)
Frame = -3
Query: 586 TGSIPQGFQVDWEAILNMDLNSFMNSVKSWLYPSLKVTTSWKDYPDIASTFTTTGSVIAA 407
T SIP+ Q DWEAIL SF++ +K WLYP+ + + + ++S F T +I
Sbjct: 985 TSSIPKNQQPDWEAILRPTTTSFISVIKPWLYPA-RSKFNLQTTSLVSSQFNTIKKMIQV 1043
Query: 406 LSSSD 392
L++S+
Sbjct: 1044 LNNSN 1048
>dbj|BAC11700.1| unnamed protein product [Homo sapiens]
Length = 806
Score = 41.6 bits (96), Expect = 0.008
Identities = 24/66 (36%), Positives = 38/66 (57%), Gaps = 1/66 (1%)
Frame = -3
Query: 592 EFTGSIPQGFQVDWEAILNMDLNSFMNSVKSWLYPSLK-VTTSWKDYPDIASTFTTTGSV 416
E G IP+G VD+EA+ +F KSW+ +LK ++ S+K P ++ TF T S+
Sbjct: 733 EVAGKIPKGKLVDFEAMTAPGSEAFSKVAKSWM--NLKSISPSYKTLPSVSETFPTLRSM 790
Query: 415 IAALSS 398
I L++
Sbjct: 791 IEVLNT 796
>ref|NP_078801.1| hypothetical protein FLJ22584 [Homo sapiens]
gi|10439026|dbj|BAB15407.1| unnamed protein product
[Homo sapiens]
Length = 308
Score = 41.6 bits (96), Expect = 0.008
Identities = 24/66 (36%), Positives = 38/66 (57%), Gaps = 1/66 (1%)
Frame = -3
Query: 592 EFTGSIPQGFQVDWEAILNMDLNSFMNSVKSWLYPSLK-VTTSWKDYPDIASTFTTTGSV 416
E G IP+G VD+EA+ +F KSW+ +LK ++ S+K P ++ TF T S+
Sbjct: 235 EVAGKIPKGKLVDFEAMTAPGSEAFSKVAKSWM--NLKSISPSYKTLPSVSETFPTLRSM 292
Query: 415 IAALSS 398
I L++
Sbjct: 293 IEVLNT 298
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 532,111,006
Number of Sequences: 1393205
Number of extensions: 11142756
Number of successful extensions: 27566
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 26774
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 27555
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 23140425222
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
