Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000752A_C01 KMC000752A_c01
(621 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||A57632 homeotic protein BEL1 - Arabidopsis thaliana 73 3e-12
ref|NP_198957.1| homeodomain protein, BELL1 (BEL1); protein id: ... 73 3e-12
gb|AAN03624.1|AF406700_1 BEL1-related homeotic protein 14 [Solan... 62 5e-09
dbj|BAA85436.1| EST AU056781(S20871) corresponds to a region of ... 35 0.79
gb|AAK38646.1|AF334759_1 homeodomain protein JUBEL2 [Hordeum vul... 34 1.3
>pir||A57632 homeotic protein BEL1 - Arabidopsis thaliana
Length = 610
Score = 72.8 bits (177), Expect = 3e-12
Identities = 49/79 (62%), Positives = 54/79 (68%), Gaps = 5/79 (6%)
Frame = -3
Query: 607 GGVRSXGVSLTLGLPPHGGSG-VSLAFPPPTHQSS-LFYSRDQIEDCQPVQYS---LLDG 443
GG R VSLTLGL + G+G VSLA P T Q LFY RD IE+ PVQYS L D
Sbjct: 533 GGPRGD-VSLTLGLQRNDGNGGVSLALSPVTAQGGQLFYGRDHIEE-GPVQYSASMLDDD 590
Query: 442 EGQNLPYRNLMGAQLLHDL 386
+ QNLPYRNLMGAQLLHD+
Sbjct: 591 QVQNLPYRNLMGAQLLHDI 609
>ref|NP_198957.1| homeodomain protein, BELL1 (BEL1); protein id: At5g41410.1,
supported by cDNA: gi_1122532, supported by cDNA:
gi_15146192, supported by cDNA: gi_15450865 [Arabidopsis
thaliana] gi|9758050|dbj|BAB08513.1| homeotic protein
BEL1 homolog [Arabidopsis thaliana]
gi|15146193|gb|AAK83580.1| AT5g41410/MYC6_12
[Arabidopsis thaliana] gi|27363268|gb|AAO11553.1|
At5g41410/MYC6_12 [Arabidopsis thaliana]
gi|28202125|gb|AAB05099.2| homeobox protein [Arabidopsis
thaliana]
Length = 611
Score = 72.8 bits (177), Expect = 3e-12
Identities = 49/79 (62%), Positives = 54/79 (68%), Gaps = 5/79 (6%)
Frame = -3
Query: 607 GGVRSXGVSLTLGLPPHGGSG-VSLAFPPPTHQSS-LFYSRDQIEDCQPVQYS---LLDG 443
GG R VSLTLGL + G+G VSLA P T Q LFY RD IE+ PVQYS L D
Sbjct: 534 GGPRGD-VSLTLGLQRNDGNGGVSLALSPVTAQGGQLFYGRDHIEE-GPVQYSASMLDDD 591
Query: 442 EGQNLPYRNLMGAQLLHDL 386
+ QNLPYRNLMGAQLLHD+
Sbjct: 592 QVQNLPYRNLMGAQLLHDI 610
>gb|AAN03624.1|AF406700_1 BEL1-related homeotic protein 14 [Solanum tuberosum]
Length = 532
Score = 62.4 bits (150), Expect = 5e-09
Identities = 40/68 (58%), Positives = 43/68 (62%), Gaps = 7/68 (10%)
Frame = -3
Query: 589 GVSLTLGLPPHGGSGVS------LAFPPPTHQSSLFYSRDQIEDCQPVQYS-LLDGEGQN 431
GVSLTLGL HGGSG S + P +QSSLFY RD + VQYS LLD E QN
Sbjct: 464 GVSLTLGLQQHGGSGGSSMGLTTFSSQPSHNQSSLFYPRDDDQ----VQYSSLLDSENQN 519
Query: 430 LPYRNLMG 407
LPYRNL G
Sbjct: 520 LPYRNLDG 527
>dbj|BAA85436.1| EST AU056781(S20871) corresponds to a region of the predicted
gene.~similar to homeobox protein (U39944) [Oryza sativa
(japonica cultivar-group)] gi|25553531|dbj|BAC24807.1|
OSJNBa0004I20.2 [Oryza sativa (japonica cultivar-group)]
Length = 357
Score = 35.0 bits (79), Expect = 0.79
Identities = 26/69 (37%), Positives = 34/69 (48%), Gaps = 9/69 (13%)
Frame = -3
Query: 559 HGGSGVSLAFPPPTHQ----SSLFYSRDQIEDCQPVQYSLL-----DGEGQNLPYRNLMG 407
HGG+ VSL Q +S+ + Q + Q S + + E LPYRNLM
Sbjct: 288 HGGA-VSLTLGLQQQQQPFAASMMHQHQQHQHQHQQQQSFMVEAAEEEEDDVLPYRNLME 346
Query: 406 AQLLHDLAG 380
+QLLHD AG
Sbjct: 347 SQLLHDFAG 355
>gb|AAK38646.1|AF334759_1 homeodomain protein JUBEL2 [Hordeum vulgare]
Length = 611
Score = 34.3 bits (77), Expect = 1.3
Identities = 28/77 (36%), Positives = 35/77 (45%)
Frame = -3
Query: 610 NGGVRSXGVSLTLGLPPHGGSGVSLAFPPPTHQSSLFYSRDQIEDCQPVQYSLLDGEGQN 431
NGG GVSLTLGL H + V P P + + F D + D P G GQ+
Sbjct: 544 NGG----GVSLTLGL--HQNNRVCFGEPLPANLAHRFGLEDVVSD--PYVMGSFGG-GQD 594
Query: 430 LPYRNLMGAQLLHDLAG 380
+ +G LLHD G
Sbjct: 595 RHFAKEIGGHLLHDFVG 611
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 551,359,993
Number of Sequences: 1393205
Number of extensions: 11764931
Number of successful extensions: 25770
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 24828
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25759
length of database: 448,689,247
effective HSP length: 118
effective length of database: 284,291,057
effective search space used: 25017613016
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
