Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000750A_C02 KMC000750A_c02
(700 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_172667.1| hypothetical protein; protein id: At1g12030.1 [... 64 3e-09
pir||T01454 hypothetical protein F24O1.16 - Arabidopsis thaliana... 62 6e-09
ref|NP_176432.1| unknown protein; protein id: At1g62420.1 [Arabi... 62 6e-09
pir||G84809 hypothetical protein At2g38820 [imported] - Arabidop... 55 9e-07
ref|NP_565896.1| expressed protein; protein id: At2g38820.1, sup... 55 9e-07
>ref|NP_172667.1| hypothetical protein; protein id: At1g12030.1 [Arabidopsis
thaliana] gi|25402699|pir||D86255 hypothetical protein
[imported] - Arabidopsis thaliana
gi|3157929|gb|AAC17612.1| Contains similarity to
hypothetical protein gb|Z97336 from A. thaliana.
[Arabidopsis thaliana]
Length = 295
Score = 63.5 bits (153), Expect = 3e-09
Identities = 34/86 (39%), Positives = 53/86 (61%), Gaps = 1/86 (1%)
Frame = -1
Query: 601 CKYS*EKNARLTVRDYEYIDVNFSG-NGYIIVCSLATEFKISHPTYHYTFLVEILPLIFV 425
CK EK + T YEY+DV N YI+ +LA EF+I+ PT Y ++ +P +FV
Sbjct: 128 CKSRWEKFGKNTAGKYEYVDVKAGDKNRYIVETNLAGEFEIARPTTRYLSVLAQVPRVFV 187
Query: 424 C*MEELKRVVRLLCSALKGSMERMEL 347
EELK++VR++C ++ SM+R ++
Sbjct: 188 GTPEELKQLVRIMCFEIRRSMKRADI 213
>pir||T01454 hypothetical protein F24O1.16 - Arabidopsis thaliana
gi|7940287|gb|AAF70846.1|AC003113_13 F2401.16
[Arabidopsis thaliana] gi|26450592|dbj|BAC42408.1|
unknown protein [Arabidopsis thaliana]
Length = 283
Score = 62.4 bits (150), Expect = 6e-09
Identities = 34/94 (36%), Positives = 54/94 (57%), Gaps = 3/94 (3%)
Frame = -1
Query: 601 CKYS*EKNARLTVRDYEYIDVNFSG---NGYIIVCSLATEFKISHPTYHYTFLVEILPLI 431
CK S E+ + T YEY+DV G N Y + +LA EF+I+ PT Y ++ +P +
Sbjct: 126 CKSSWERFGKNTGGKYEYVDVRCGGDYNNRYFVETNLAGEFEIARPTKRYLSILSQVPRV 185
Query: 430 FVC*MEELKRVVRLLCSALKGSMERMELQLSEMR 329
FV EELK +VR++C ++ SM+ + + + R
Sbjct: 186 FVGTSEELKLLVRIMCHEMRRSMKHVGIHVPPWR 219
>ref|NP_176432.1| unknown protein; protein id: At1g62420.1 [Arabidopsis thaliana]
Length = 465
Score = 62.4 bits (150), Expect = 6e-09
Identities = 34/94 (36%), Positives = 54/94 (57%), Gaps = 3/94 (3%)
Frame = -1
Query: 601 CKYS*EKNARLTVRDYEYIDVNFSG---NGYIIVCSLATEFKISHPTYHYTFLVEILPLI 431
CK S E+ + T YEY+DV G N Y + +LA EF+I+ PT Y ++ +P +
Sbjct: 126 CKSSWERFGKNTGGKYEYVDVRCGGDYNNRYFVETNLAGEFEIARPTKRYLSILSQVPRV 185
Query: 430 FVC*MEELKRVVRLLCSALKGSMERMELQLSEMR 329
FV EELK +VR++C ++ SM+ + + + R
Sbjct: 186 FVGTSEELKLLVRIMCHEMRRSMKHVGIHVPPWR 219
>pir||G84809 hypothetical protein At2g38820 [imported] - Arabidopsis thaliana
Length = 310
Score = 55.1 bits (131), Expect = 9e-07
Identities = 28/91 (30%), Positives = 49/91 (53%)
Frame = -1
Query: 601 CKYS*EKNARLTVRDYEYIDVNFSGNGYIIVCSLATEFKISHPTYHYTFLVEILPLIFVC 422
CK EK+ +YEY+DV G +I ++F+I+ T Y +++ LP IFV
Sbjct: 177 CKSRWEKSPSCPAGEYEYVDVIMKGERLLIDIDFKSKFEIARATKTYKSMLQTLPYIFVG 236
Query: 421 *MEELKRVVRLLCSALKGSMERMELQLSEMR 329
+ L++++ L+C A K S+++ L + R
Sbjct: 237 KADRLQKIIVLICKAAKQSLKKKGLHVPPWR 267
>ref|NP_565896.1| expressed protein; protein id: At2g38820.1, supported by cDNA:
gi_16649128, supported by cDNA: gi_20148590 [Arabidopsis
thaliana] gi|16649129|gb|AAL24416.1| Unknown protein
[Arabidopsis thaliana] gi|20148591|gb|AAM10186.1|
unknown protein [Arabidopsis thaliana]
gi|20198107|gb|AAD25563.2| expressed protein
[Arabidopsis thaliana]
Length = 288
Score = 55.1 bits (131), Expect = 9e-07
Identities = 28/91 (30%), Positives = 49/91 (53%)
Frame = -1
Query: 601 CKYS*EKNARLTVRDYEYIDVNFSGNGYIIVCSLATEFKISHPTYHYTFLVEILPLIFVC 422
CK EK+ +YEY+DV G +I ++F+I+ T Y +++ LP IFV
Sbjct: 155 CKSRWEKSPSCPAGEYEYVDVIMKGERLLIDIDFKSKFEIARATKTYKSMLQTLPYIFVG 214
Query: 421 *MEELKRVVRLLCSALKGSMERMELQLSEMR 329
+ L++++ L+C A K S+++ L + R
Sbjct: 215 KADRLQKIIVLICKAAKQSLKKKGLHVPPWR 245
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 560,431,794
Number of Sequences: 1393205
Number of extensions: 11716580
Number of successful extensions: 24024
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 23023
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23999
length of database: 448,689,247
effective HSP length: 119
effective length of database: 282,897,852
effective search space used: 31967457276
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
