Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000749A_C02 KMC000749A_c02
(566 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
sp|P35100|CLPA_PEA ATP-dependent clp protease ATP-binding subuni... 136 2e-31
sp|P31542|CLAB_LYCES ATP-dependent clp protease ATP-binding subu... 130 1e-29
sp|P31541|CLAA_LYCES ATP-dependent clp protease ATP-binding subu... 124 6e-28
pir||T12210 endopeptidase Clp ATP-binding chain precursor - comm... 123 2e-27
pir||T52292 endopeptidase Clp (EC 3.4.21.92) ATP-binding chain C... 121 5e-27
>sp|P35100|CLPA_PEA ATP-dependent clp protease ATP-binding subunit clpA homolog,
chloroplast precursor gi|419773|pir||S31164 endopeptidase
Clp (EC 3.4.21.-) ATP-binding chain, chloroplast
[similarity] - garden pea gi|169128|gb|AAA33680.1|
nuclear encoded precursor to chloroplast protein
Length = 922
Score = 136 bits (343), Expect = 2e-31
Identities = 68/77 (88%), Positives = 74/77 (95%)
Frame = -3
Query: 564 ERFRHRVVDEGYDPSYGARPLRRAIMRLLEDSMAEKMLAREIQEGDSVIVDVDSDGNVIV 385
ERFR RVVDEGY+PSYGARPLRRAIMRLLEDSMAEKMLAREI+EGDSVIVDVDSDG VIV
Sbjct: 846 ERFRDRVVDEGYNPSYGARPLRRAIMRLLEDSMAEKMLAREIKEGDSVIVDVDSDGKVIV 905
Query: 384 LHGSSGTPDSVPEALPV 334
L+GSSGTP+S+PEAL +
Sbjct: 906 LNGSSGTPESLPEALSI 922
>sp|P31542|CLAB_LYCES ATP-dependent clp protease ATP-binding subunit clpA homolog CD4B,
chloroplast precursor gi|100190|pir||B35905 endopeptidase
Clp (EC 3.4.21.-) ATP-binding chain cd4B, chloroplast
[similarity] - tomato gi|170435|gb|AAA34161.1|
ATP-dependent protease (CD4B)
Length = 923
Score = 130 bits (327), Expect = 1e-29
Identities = 67/78 (85%), Positives = 71/78 (90%), Gaps = 1/78 (1%)
Frame = -3
Query: 564 ERFRHRVVDEGYDPSYGARPLRRAIMRLLEDSMAEKMLAREIQEGDSVIVDVDSDGNVIV 385
ERFR RVVDEGY+PSYGARPLRRAIMRLLEDSMAEKMLA EI+EGDSVIVDVDSDGNV V
Sbjct: 846 ERFRDRVVDEGYNPSYGARPLRRAIMRLLEDSMAEKMLANEIKEGDSVIVDVDSDGNVTV 905
Query: 384 LHGSSGTP-DSVPEALPV 334
L+GSSGTP D PE +PV
Sbjct: 906 LNGSSGTPSDPAPEPIPV 923
>sp|P31541|CLAA_LYCES ATP-dependent clp protease ATP-binding subunit clpA homolog CD4A,
chloroplast precursor gi|100189|pir||A35905 endopeptidase
Clp (EC 3.4.21.-) ATP-binding chain cd4A, chloroplast
[similarity] - tomato gi|170433|gb|AAA34160.1|
ATP-dependent protease (CD4A)
Length = 926
Score = 124 bits (312), Expect = 6e-28
Identities = 65/78 (83%), Positives = 70/78 (89%), Gaps = 1/78 (1%)
Frame = -3
Query: 564 ERFRHRVVDEGYDPSYGARPLRRAIMRLLEDSMAEKMLAREIQEGDSVIVDVDSDGNVIV 385
ERFR RVVDEGY+PSYGARPLRRAIMRLLEDSMAEKMLA EI+EGDSVIVDVDSDGNV V
Sbjct: 849 ERFRDRVVDEGYNPSYGARPLRRAIMRLLEDSMAEKMLAGEIKEGDSVIVDVDSDGNVTV 908
Query: 384 LHGSSGTP-DSVPEALPV 334
L+G+SG P DS PE + V
Sbjct: 909 LNGTSGAPSDSAPEPILV 926
>pir||T12210 endopeptidase Clp ATP-binding chain precursor - common ice plant
(fragment) gi|2995947|gb|AAC08399.1| ATP-dependent
protease [Mesembryanthemum crystallinum]
Length = 75
Score = 123 bits (308), Expect = 2e-27
Identities = 64/73 (87%), Positives = 67/73 (91%)
Frame = -3
Query: 555 RHRVVDEGYDPSYGARPLRRAIMRLLEDSMAEKMLAREIQEGDSVIVDVDSDGNVIVLHG 376
R RVVDEGY+PSYGARPLRRAIMRLLEDSMAEKMLAREI+EGDSVIVDVDSDGNVIVL+G
Sbjct: 1 RDRVVDEGYNPSYGARPLRRAIMRLLEDSMAEKMLAREIKEGDSVIVDVDSDGNVIVLNG 60
Query: 375 SSGTPDSVPEALP 337
SSG P PE LP
Sbjct: 61 SSGVP---PETLP 70
>pir||T52292 endopeptidase Clp (EC 3.4.21.92) ATP-binding chain C, chloroplast
[imported] - Arabidopsis thaliana
gi|2921158|gb|AAC04687.1| ClpC [Arabidopsis thaliana]
Length = 928
Score = 121 bits (304), Expect = 5e-27
Identities = 62/81 (76%), Positives = 71/81 (87%), Gaps = 4/81 (4%)
Frame = -3
Query: 564 ERFRHRVVDEGYDPSYGARPLRRAIMRLLEDSMAEKMLAREIQEGDSVIVDVDSDGNVIV 385
ERF+ RVVDEGY+PSYGARPLRRAIMRLLEDSMAEKMLAREI+EGDSVIVDVD++GNV V
Sbjct: 847 ERFKERVVDEGYNPSYGARPLRRAIMRLLEDSMAEKMLAREIKEGDSVIVDVDAEGNVTV 906
Query: 384 LHGSSGTP----DSVPEALPV 334
L+G SGTP + ++LPV
Sbjct: 907 LNGGSGTPTTSLEEQEDSLPV 927
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 500,825,674
Number of Sequences: 1393205
Number of extensions: 10909075
Number of successful extensions: 26885
Number of sequences better than 10.0: 377
Number of HSP's better than 10.0 without gapping: 26034
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 26881
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 20669577624
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
